JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OGG1_chr3_9744952_9762407	0/1	c0002	1038	156	12	25	95	4	19	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	c0003	1038	12	12	0	0	0	0	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	c0004	1038	2	0	0	0	2	0	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	c0005	1038	1	0	0	1	0	0	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	c0006	1038	1	1	0	0	0	0	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	c0007	1038	1	1	0	0	0	0	copy fasta	OGG1	chr3	9744952	9762407
OGN_chr9_92378268_92409578	1/1	c0001	897	364	78	66	168	14	36	copy fasta	OGN	chr9	92378268	92409578
OGN_chr9_92378268_92409578	0/0	c0002	897	2	0	0	0	0	2	copy fasta	OGN	chr9	92378268	92409578
OGT_chrX_71528104_71580892	1/1	c0001	3141	237	47	40	107	9	32	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	c0002	3141	13	13	0	0	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	c0003	3141	2	0	0	2	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	c0004	3141	2	2	0	0	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	c0005	3140	1	0	0	1	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	c0006	3141	1	0	1	0	0	0	copy fasta	OGT	chrX	71528104	71580892
OGT_chrX_71528104_71580892	0/0	c0007	3141	1	0	0	1	0	0	copy fasta	OGT	chrX	71528104	71580892
OIP5_chr15_41304273_41337591	1/1	c0001	690	325	73	52	147	12	39	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	c0002	690	20	0	3	17	0	0	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	c0003	690	6	4	2	0	0	0	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	c0004	690	2	2	0	0	0	0	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	c0005	690	1	1	0	0	0	0	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	c0006	690	1	0	0	0	0	1	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	c0007	669	1	0	1	0	0	0	copy fasta	OIP5	chr15	41304273	41337591
OIT3_chr10_72888739_72938036	1/1	c0001	1638	248	76	36	106	6	22	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	c0002	1638	6	6	0	0	0	0	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	c0003	1638	6	6	0	0	0	0	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	c0004	1638	6	0	0	6	0	0	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	c0005	1638	2	0	0	0	0	2	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	c0006	1638	2	2	0	0	0	0	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	c0007	1638	2	2	0	0	0	0	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	c0008	1638	1	0	0	1	0	0	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	c0009	1638	1	1	0	0	0	0	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	c0010	1638	1	1	0	0	0	0	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	c0011	1638	1	0	0	1	0	0	copy fasta	OIT3	chr10	72888739	72938036
OLA1_chr2_174067447_174253532	1/0	c0001	1191	232	58	48	85	8	32	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/1	c0002	1191	22	13	4	1	0	3	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	c0003	1191	3	0	2	0	0	1	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	c0004	1191	2	2	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	c0005	1191	1	0	0	0	0	1	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	c0006	1191	1	1	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	c0007	1191	1	0	0	0	0	1	copy fasta	OLA1	chr2	174067447	174253532
OLAH_chr10_15038943_15078853	1/1	c0001	798	201	50	47	72	9	21	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	c0002	798	194	38	32	99	6	19	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	c0003	798	2	2	0	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	c0004	798	2	1	1	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	c0005	798	2	2	0	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	c0006	798	1	1	0	0	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	c0007	798	1	0	0	0	1	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	c0008	798	1	0	0	1	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	c0009	798	1	0	0	1	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	c0010	798	1	0	0	1	0	0	copy fasta	OLAH	chr10	15038943	15078853