JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OLFM1_chr9_135082668_135126180	0/1	c0001	1458	247	66	51	76	11	42	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	1/0	c0002	1458	94	12	29	43	2	7	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	c0003	1458	8	8	0	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	c0004	1458	2	2	0	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	c0005	1458	2	1	1	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	c0006	1458	1	0	0	0	0	1	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	c0007	1458	1	0	0	1	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	c0008	1458	1	1	0	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	c0009	1458	1	0	0	1	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	c0010	1410	1	0	0	1	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	c0011	1458	1	0	1	0	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	c0012	1458	1	0	0	0	1	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM2_chr19_9848718_9941515	1/1	c0001	1365	218	79	26	83	5	23	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	c0002	1365	68	4	15	39	0	10	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	c0003	1365	29	1	7	14	3	4	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	c0004	1365	17	2	10	0	2	3	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	c0005	1365	5	0	0	5	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	c0006	1365	3	3	0	0	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	c0007	1365	1	0	0	1	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	c0008	1365	1	1	0	0	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM3_chr1_101797560_102001926	1/1	c0001	1377	266	57	41	125	4	37	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	c0002	1377	32	20	10	0	0	2	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	c0003	1377	2	1	1	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	c0004	1377	1	1	0	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	c0005	1377	1	1	0	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	c0006	1377	1	0	0	1	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	c0007	1377	1	1	0	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	c0008	1377	1	0	0	0	0	1	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	c0009	1377	1	1	0	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM4_chr13_53023813_53057057	0/1	c0001	1533	258	24	49	150	8	26	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	1/0	c0002	1533	145	31	26	65	2	20	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0003	1533	20	16	4	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0004	1533	16	11	5	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0005	1533	4	4	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0006	1533	3	1	0	0	1	1	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0007	1533	3	2	1	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0008	1533	2	1	0	0	0	1	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0009	1533	2	2	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0010	1533	2	0	0	2	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0011	1533	1	1	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0012	1533	1	0	0	1	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0013	1533	1	1	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0014	1533	1	0	0	1	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0015	1533	1	0	0	1	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0016	1533	1	0	0	0	1	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0017	1533	1	0	0	0	0	1	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0018	1533	1	0	1	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0019	1533	1	1	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0020	1533	1	1	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	c0021	1533	1	0	0	0	0	1	copy fasta	OLFM4	chr13	53023813	53057057