JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OLFML1_chr11_7480506_7516377	1/0	c0001	1209	271	66	47	110	8	39	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/1	c0002	1209	79	7	16	40	5	10	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	c0003	1209	18	16	2	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	c0004	1209	4	0	4	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	c0005	1209	4	1	3	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	c0006	1209	2	0	2	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	c0007	1209	2	0	2	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	c0008	1209	1	0	0	0	0	1	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	c0009	1209	1	0	1	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	c0010	1209	1	0	1	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	c0011	1209	1	0	0	1	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	c0012	1209	1	0	0	0	1	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	c0013	1209	1	1	0	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	c0014	1209	1	0	0	1	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	c0015	1209	1	1	0	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML2A_chr9_124772133_124819882	0/0	c0001	1959	273	56	41	135	8	33	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	1/1	c0002	1959	38	9	11	6	8	2	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0003	1959	13	0	3	10	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0004	1959	10	9	1	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0005	1959	9	9	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0006	1959	7	0	0	7	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0007	1959	5	3	2	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0008	1959	4	0	0	4	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0009	1959	3	3	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0010	1959	2	2	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0011	1959	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0012	1959	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0013	1959	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0014	1959	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0015	1959	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0016	1959	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0017	1959	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0018	1959	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0019	1959	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0020	1959	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0021	1959	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0022	1959	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0023	1959	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0024	1959	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0025	1959	1	0	0	0	0	1	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	c0026	1959	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2B_chr1_161978192_162028869	0/1	c0001	2253	119	11	25	62	7	13	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0002	2253	88	24	13	45	1	5	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0003	2253	54	10	11	20	0	13	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	1/0	c0004	2253	40	10	4	13	1	11	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0005	2253	15	3	0	12	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0006	2253	15	6	0	8	0	1	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0007	2253	7	6	1	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0008	2253	5	0	1	3	0	1	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0009	2253	4	0	1	0	3	0	copy fasta	OLFML2B	chr1	161978192	162028869