JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARAF_chrX_47556205_47576908	0/0	c0007	1821	1	0	0	1	0	0	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	c0008	1822	1	0	0	1	0	0	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	c0009	1821	1	0	0	0	0	1	copy fasta	ARAF	chrX	47556205	47576908
ARAP1_chr11_72680069_72757408	1/0	c0001	4353	109	51	18	29	2	8	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0002	4353	84	2	29	36	6	11	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0003	4353	64	21	14	19	2	8	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0004	4353	32	6	5	15	0	6	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0005	4353	14	0	3	11	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0006	4353	7	0	0	7	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0007	4353	6	0	1	5	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0008	4353	4	3	1	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0009	4353	3	3	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0010	4353	3	0	0	3	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0011	4353	2	0	0	2	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0012	4353	2	2	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0013	4353	1	0	0	0	0	1	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0014	4353	1	0	0	1	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0015	4353	1	1	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/1	c0016	4353	1	0	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0017	4353	1	0	0	0	0	1	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0018	4353	1	1	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0019	4353	1	0	0	0	0	1	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0020	4353	1	0	1	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0021	4353	1	1	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0022	4353	1	0	0	0	0	1	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0023	4353	1	0	0	0	0	1	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0024	4353	1	0	1	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0025	4353	1	1	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0026	4353	1	0	0	1	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0027	4353	1	0	0	1	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0028	4353	1	0	1	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0029	4353	1	0	1	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0030	4353	1	0	0	1	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0031	4353	1	0	1	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0032	4353	1	0	0	1	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0033	4353	1	0	0	1	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0034	4353	1	0	0	1	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0035	4353	1	1	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	c0036	4353	1	1	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP2_chr4_36061004_36249514	0/1	c0001	5115	160	45	33	54	10	17	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0002	5115	28	2	9	9	2	6	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0003	5115	19	0	6	12	1	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0004	5115	14	13	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0005	5115	14	4	5	0	1	4	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0006	5115	8	8	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0007	5115	5	0	0	5	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0008	5115	4	0	0	4	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0009	5115	4	0	1	3	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0010	5115	2	1	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	1/0	c0011	5115	2	0	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514