JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OLFML2B_chr1_161978192_162028869	0/0	c0010	2253	4	0	0	4	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0011	2253	3	3	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0012	2253	2	0	0	2	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0013	2253	2	2	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0014	2253	2	1	1	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0015	2253	1	0	0	1	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0016	2253	1	0	1	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0017	2253	1	0	0	1	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0018	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0019	2253	1	0	1	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0020	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0021	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0022	2253	1	0	0	1	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0023	2253	1	0	1	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0024	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0025	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0026	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0027	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0028	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0029	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0030	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0031	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0032	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0033	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0034	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0035	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0036	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0037	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	c0038	2253	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML3_chr1_113974474_113987253	1/1	c0001	1221	453	93	81	212	15	50	copy fasta	OLFML3	chr1	113974474	113987253
OLFML3_chr1_113974474_113987253	0/0	c0002	1221	3	0	0	3	0	0	copy fasta	OLFML3	chr1	113974474	113987253
OLFML3_chr1_113974474_113987253	0/0	c0003	1221	2	1	0	1	0	0	copy fasta	OLFML3	chr1	113974474	113987253
OLFML3_chr1_113974474_113987253	0/0	c0004	1221	1	0	0	0	1	0	copy fasta	OLFML3	chr1	113974474	113987253
OLFML3_chr1_113974474_113987253	0/0	c0005	1221	1	0	1	0	0	0	copy fasta	OLFML3	chr1	113974474	113987253
OLIG1_chr21_33065141_33077413	1/1	c0001	816	424	85	73	208	9	47	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	c0002	816	12	0	7	0	4	1	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	c0003	807	10	8	2	0	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	c0004	819	3	0	1	1	1	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	c0005	790	1	0	0	1	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	c0006	816	1	0	1	0	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	c0007	816	1	0	0	1	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	c0008	816	1	1	0	0	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	c0009	816	1	0	0	1	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG2_chr21_33020935_33034185	1/1	c0001	972	267	47	39	141	7	31	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	c0002	972	145	21	44	53	11	16	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	c0003	972	25	23	2	0	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	c0004	972	2	1	0	0	0	1	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	c0005	972	2	2	0	0	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	c0006	972	2	0	0	2	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	c0007	972	2	1	1	0	0	0	copy fasta	OLIG2	chr21	33020935	33034185