JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OLIG2_chr21_33020935_33034185	0/0	c0008	972	1	0	0	1	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	c0009	972	1	1	0	0	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	c0010	972	1	0	0	1	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG3_chr6_137487199_137499394	1/1	c0001	819	419	97	79	184	13	44	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	c0002	819	15	0	0	14	0	1	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	c0003	819	7	0	0	7	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	c0004	819	3	0	3	0	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	c0005	819	3	0	0	0	3	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	c0006	819	1	0	0	1	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	c0007	819	1	0	0	1	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	c0008	819	1	0	0	1	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	c0009	819	1	1	0	0	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	c0010	819	1	0	0	0	0	1	copy fasta	OLIG3	chr6	137487199	137499394
OLR1_chr12_10153301_10177132	1/0	c0001	822	317	70	62	141	11	32	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/1	c0002	822	84	18	6	46	5	8	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/0	c0003	822	1	0	0	1	0	0	copy fasta	OLR1	chr12	10153301	10177132
OMA1_chr1_58475719_58551726	1/1	c0001	1575	258	51	54	115	10	26	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	c0002	1575	35	6	6	11	5	7	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	c0003	1575	31	0	2	27	0	2	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	c0004	1575	29	18	5	0	1	5	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	c0005	1575	12	8	4	0	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	c0006	1575	7	2	4	0	0	1	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	c0007	1575	4	0	0	4	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	c0008	1575	3	3	0	0	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	c0009	1575	1	1	0	0	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	c0010	1575	1	0	0	1	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	c0011	1575	1	0	0	0	0	1	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	c0012	1575	1	0	1	0	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	c0013	1575	1	1	0	0	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMD_chr9_92407380_92429471	1/1	c0001	1266	396	89	71	187	15	32	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	c0002	1266	22	3	4	11	1	3	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	c0003	1266	5	5	0	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	c0004	1266	2	0	0	2	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	c0005	1266	1	0	0	0	0	1	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	c0006	1266	1	1	0	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	c0007	1266	1	0	1	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMG_chr17_31289647_31302239	1/1	c0001	1323	354	87	57	167	10	31	copy fasta	OMG	chr17	31289647	31302239
OMG_chr17_31289647_31302239	0/0	c0002	1323	6	0	3	0	2	1	copy fasta	OMG	chr17	31289647	31302239
OMG_chr17_31289647_31302239	0/0	c0003	1323	3	3	0	0	0	0	copy fasta	OMG	chr17	31289647	31302239
OMG_chr17_31289647_31302239	0/0	c0004	1323	1	0	0	1	0	0	copy fasta	OMG	chr17	31289647	31302239
OMP_chr11_77097840_77108331	1/0	c0001	492	335	73	56	155	14	36	copy fasta	OMP	chr11	77097840	77108331
OMP_chr11_77097840_77108331	0/0	c0002	492	83	12	18	42	1	10	copy fasta	OMP	chr11	77097840	77108331
OMP_chr11_77097840_77108331	0/1	c0003	492	10	0	8	0	1	0	copy fasta	OMP	chr11	77097840	77108331
OMP_chr11_77097840_77108331	0/0	c0004	492	4	4	0	0	0	0	copy fasta	OMP	chr11	77097840	77108331
OMP_chr11_77097840_77108331	0/0	c0005	492	4	4	0	0	0	0	copy fasta	OMP	chr11	77097840	77108331
OMP_chr11_77097840_77108331	0/0	c0006	492	1	1	0	0	0	0	copy fasta	OMP	chr11	77097840	77108331
OMP_chr11_77097840_77108331	0/0	c0007	492	1	0	0	1	0	0	copy fasta	OMP	chr11	77097840	77108331
OMP_chr11_77097840_77108331	0/0	c0008	492	1	1	0	0	0	0	copy fasta	OMP	chr11	77097840	77108331
OMP_chr11_77097840_77108331	0/0	c0009	492	1	1	0	0	0	0	copy fasta	OMP	chr11	77097840	77108331
ONECUT1_chr15_52750053_52795336	1/1	c0001	1398	377	92	65	158	18	42	copy fasta	ONECUT1	chr15	52750053	52795336