JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ONECUT1_chr15_52750053_52795336	0/0	c0002	1398	20	0	4	16	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	c0003	1398	10	3	4	1	0	2	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	c0004	1398	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	c0005	1398	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	c0006	1398	1	0	0	1	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	c0007	1398	1	0	1	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	c0008	1398	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT2_chr18_57430374_57496298	1/0	c0001	1515	164	26	31	71	9	26	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/1	c0002	1515	155	30	24	88	1	11	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0003	1515	36	11	2	14	2	7	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0004	1515	15	8	2	4	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0005	1515	6	4	2	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0006	1518	3	2	1	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0007	1515	3	3	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0008	1515	3	3	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0009	1518	2	2	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0010	1515	2	0	0	2	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0011	1515	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0012	1515	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0013	1515	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0014	1518	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0015	1518	1	0	0	0	0	1	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0016	1515	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0017	1515	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0018	1515	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0019	1515	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0020	1515	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	c0021	1527	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT3_chr19_1748506_1785988	1/1	c0001	1485	318	70	76	121	14	35	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0002	1486	9	2	3	3	0	1	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0003	1486	8	2	1	2	0	3	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0004	1485	5	4	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0005	1485	5	5	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0006	1485	3	0	0	3	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0007	1485	2	0	0	0	2	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0008	1487	2	0	0	1	0	1	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0009	1485	2	2	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0010	1485	2	2	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0011	1485	2	0	0	0	0	2	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0012	1485	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0013	1486	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0014	1485	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0015	1485	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0016	1485	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0017	1486	1	0	0	0	0	1	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0018	1485	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0019	1485	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0020	1485	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0021	1485	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	c0022	1485	1	0	0	0	0	1	copy fasta	ONECUT3	chr19	1748506	1785988