JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ONECUT3_chr19_1748506_1785988	0/0	c0023	1485	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
OOEP_chr6_73363555_73374897	0/0	c0001	450	211	26	39	103	15	28	copy fasta	OOEP	chr6	73363555	73374897
OOEP_chr6_73363555_73374897	1/1	c0002	450	139	40	25	55	1	16	copy fasta	OOEP	chr6	73363555	73374897
OOEP_chr6_73363555_73374897	0/0	c0003	450	63	11	16	36	0	0	copy fasta	OOEP	chr6	73363555	73374897
OOEP_chr6_73363555_73374897	0/0	c0004	450	11	11	0	0	0	0	copy fasta	OOEP	chr6	73363555	73374897
OOEP_chr6_73363555_73374897	0/0	c0005	450	2	0	0	2	0	0	copy fasta	OOEP	chr6	73363555	73374897
OOEP_chr6_73363555_73374897	0/0	c0006	450	1	0	0	1	0	0	copy fasta	OOEP	chr6	73363555	73374897
OOEP_chr6_73363555_73374897	0/0	c0007	450	1	0	0	1	0	0	copy fasta	OOEP	chr6	73363555	73374897
OOSP1_chr11_59933432_59962480	1/1	c0001	555	382	92	70	160	14	44	copy fasta	OOSP1	chr11	59933432	59962480
OOSP1_chr11_59933432_59962480	0/0	c0002	555	2	2	0	0	0	0	copy fasta	OOSP1	chr11	59933432	59962480
OOSP1_chr11_59933432_59962480	0/0	c0003	555	1	1	0	0	0	0	copy fasta	OOSP1	chr11	59933432	59962480
OOSP1_chr11_59933432_59962480	0/0	c0004	555	1	1	0	0	0	0	copy fasta	OOSP1	chr11	59933432	59962480
OOSP2_chr11_60035409_60053044	1/1	c0001	477	192	71	17	65	11	26	copy fasta	OOSP2	chr11	60035409	60053044
OOSP2_chr11_60035409_60053044	0/0	c0002	477	5	1	1	0	3	0	copy fasta	OOSP2	chr11	60035409	60053044
OOSP2_chr11_60035409_60053044	0/0	c0003	477	1	0	0	1	0	0	copy fasta	OOSP2	chr11	60035409	60053044
OOSP3_chr11_59873782_59901483	1/1	c0001	582	283	88	64	94	9	26	copy fasta	OOSP3	chr11	59873782	59901483
OOSP3_chr11_59873782_59901483	0/0	c0002	582	30	0	7	13	1	9	copy fasta	OOSP3	chr11	59873782	59901483
OOSP3_chr11_59873782_59901483	0/0	c0003	582	26	4	3	15	2	2	copy fasta	OOSP3	chr11	59873782	59901483
OOSP3_chr11_59873782_59901483	0/0	c0004	582	2	0	2	0	0	0	copy fasta	OOSP3	chr11	59873782	59901483
OOSP3_chr11_59873782_59901483	0/0	c0005	582	1	0	0	0	0	1	copy fasta	OOSP3	chr11	59873782	59901483
OOSP4A_chr11_59959033_59975343	1/1	c0001	555	401	86	76	188	11	38	copy fasta	OOSP4A	chr11	59959033	59975343
OOSP4A_chr11_59959033_59975343	0/0	c0002	555	3	1	2	0	0	0	copy fasta	OOSP4A	chr11	59959033	59975343
OOSP4A_chr11_59959033_59975343	0/0	c0003	555	3	3	0	0	0	0	copy fasta	OOSP4A	chr11	59959033	59975343
OOSP4A_chr11_59959033_59975343	0/0	c0004	555	2	2	0	0	0	0	copy fasta	OOSP4A	chr11	59959033	59975343
OOSP4A_chr11_59959033_59975343	0/0	c0005	555	1	1	0	0	0	0	copy fasta	OOSP4A	chr11	59959033	59975343
OOSP4A_chr11_59959033_59975343	0/0	c0006	555	1	0	0	0	1	0	copy fasta	OOSP4A	chr11	59959033	59975343
OOSP4A_chr11_59959033_59975343	0/0	c0007	555	1	1	0	0	0	0	copy fasta	OOSP4A	chr11	59959033	59975343
OOSP4B_chr11_60012181_60036095	1/1	c0001	483	327	81	56	147	14	27	copy fasta	OOSP4B	chr11	60012181	60036095
OOSP4B_chr11_60012181_60036095	0/0	c0002	483	67	9	9	39	1	9	copy fasta	OOSP4B	chr11	60012181	60036095
OOSP4B_chr11_60012181_60036095	0/0	c0003	483	1	0	0	0	1	0	copy fasta	OOSP4B	chr11	60012181	60036095
OOSP4B_chr11_60012181_60036095	0/0	c0004	483	1	0	1	0	0	0	copy fasta	OOSP4B	chr11	60012181	60036095
OPA1_chr3_193588208_193702811	1/0	c0001	3048	192	37	34	85	11	24	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/1	c0002	3048	131	43	24	48	5	10	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	c0003	3048	18	0	0	18	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	c0004	3048	12	2	1	9	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	c0005	3048	11	5	1	4	0	1	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	c0006	3048	8	0	2	6	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	c0007	3048	5	0	0	5	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	c0008	3048	3	0	1	0	0	2	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	c0009	3048	3	0	1	0	0	2	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	c0010	3048	2	0	1	0	0	1	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	c0011	3048	1	1	0	0	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	c0012	3048	1	0	0	1	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	c0013	3048	1	0	1	0	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA3_chr19_45541281_45589802	0/1	c0001	540	318	75	61	140	10	31	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	1/0	c0002	540	78	17	17	26	6	11	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	c0003	540	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	c0004	540	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPALIN_chr10_96338221_96364002	1/1	c0001	426	396	98	70	171	12	43	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	c0002	426	2	0	0	0	0	2	copy fasta	OPALIN	chr10	96338221	96364002