JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OPALIN_chr10_96338221_96364002	0/0	c0003	426	2	0	2	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	c0004	426	1	0	0	1	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	c0005	426	1	0	0	0	0	1	copy fasta	OPALIN	chr10	96338221	96364002
OPCML_chr11_132409981_133537501	0/0	c0001	1017	68	46	16	0	2	4	copy fasta	OPCML	chr11	132409981	133537501
OPHN1_chrX_68037344_68438495	1/0	c0001	2409	149	53	26	48	7	14	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/1	c0002	2409	2	0	1	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	c0003	2409	2	0	0	0	0	2	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	c0004	2409	1	1	0	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	c0005	2407	1	0	1	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPLAH_chr8_144046266_144065692	0/0	c0001	3867	211	30	42	98	8	33	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0002	3867	17	17	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0003	3867	15	15	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	1/0	c0004	3867	8	0	2	5	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0005	3867	8	8	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0006	3867	6	0	4	0	1	1	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/1	c0007	3867	4	0	2	0	0	1	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0008	3867	4	0	1	0	2	1	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0009	3867	4	4	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0010	3867	4	4	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0011	3867	3	0	0	0	2	1	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0012	3867	3	0	2	0	1	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0013	3867	2	0	0	1	1	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0014	3867	2	2	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0015	3867	1	0	0	0	0	1	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0016	3867	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0017	3867	1	0	0	1	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0018	3867	1	0	0	0	0	1	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0019	3867	1	0	1	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0020	3867	1	0	0	1	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0021	3867	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0022	3867	1	0	0	1	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0023	3867	1	0	1	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0024	3867	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0025	3867	1	0	0	0	1	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0026	3867	1	0	0	1	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0027	3867	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0028	3867	1	0	0	0	0	1	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0029	3867	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0030	3867	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0031	3867	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0032	3867	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0033	3867	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0034	3867	1	0	1	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0035	3867	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0036	3867	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0037	3867	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0038	3867	1	0	1	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0039	3867	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0040	3867	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	c0041	3867	1	0	1	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692