JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OPN1LW_chrX_154139243_154164032	0/1	c0001	1095	93	20	8	52	2	10	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0002	1095	30	0	13	12	2	3	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	1/0	c0003	1095	24	0	6	14	2	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0004	1095	21	2	5	9	2	3	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0005	1095	18	1	3	9	0	5	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0006	1095	7	1	2	2	0	2	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0007	1095	6	0	1	5	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0008	1095	4	0	4	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0009	1095	3	0	0	3	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0010	1095	3	1	1	0	0	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0011	1095	3	1	1	0	0	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0012	1095	3	0	2	0	1	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0013	1095	3	1	0	1	0	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0014	1095	3	3	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0015	1095	2	0	0	0	0	2	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0016	1095	2	0	2	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0017	1095	2	2	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0018	1095	2	1	0	1	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0019	1095	2	1	0	0	1	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0020	1095	2	0	0	2	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0021	1095	1	0	0	0	0	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0022	1095	1	0	0	0	0	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0023	1095	1	0	1	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0024	1095	1	0	0	0	1	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0025	1095	1	0	1	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0026	1095	1	0	1	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0027	1095	1	0	0	1	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0028	1095	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0029	1095	1	0	0	0	0	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0030	1095	1	0	0	1	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0031	1094	1	0	0	1	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0032	1095	1	0	1	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0033	1095	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0034	1095	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0035	1095	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0036	1096	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0037	1095	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0038	1095	1	0	1	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0039	1095	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0040	1095	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0041	1095	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0042	1095	1	0	0	1	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0043	1095	1	0	0	1	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0044	1091	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	c0045	1095	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1MW2_chrX_154214756_154238286	0/0	c0001	1095	18	1	1	10	0	6	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0002	1095	15	10	2	1	1	1	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0003	1095	14	0	0	12	0	2	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0004	1095	8	0	0	8	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0005	1095	6	5	1	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286