JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OPN1SW_chr7_128767485_128780794	0/0	c0006	1038	1	0	0	1	0	0	copy fasta	OPN1SW	chr7	128767485	128780794
OPN1SW_chr7_128767485_128780794	0/0	c0007	1038	1	0	0	1	0	0	copy fasta	OPN1SW	chr7	128767485	128780794
OPN3_chr1_241588124_241645369	1/1	c0001	1209	375	88	63	162	16	44	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	c0002	1209	16	0	1	14	0	1	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	c0003	1209	9	9	0	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	c0004	1209	4	0	0	4	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	c0005	1209	2	0	2	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	c0006	1209	1	1	0	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	c0007	1209	1	0	0	1	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	c0008	1209	1	0	0	0	0	1	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	c0009	1209	1	0	0	1	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN4_chr10_86649547_86671460	0/0	c0001	1437	122	15	14	81	2	10	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/1	c0002	1437	103	6	17	57	5	17	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	1/0	c0003	1437	94	19	18	44	7	5	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0004	1437	21	19	2	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0005	1437	21	1	12	5	2	1	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0006	1437	20	0	14	0	2	4	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0007	1437	18	15	2	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0008	1437	13	1	0	8	0	4	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0009	1437	5	3	2	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0010	1437	5	4	1	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0011	1437	4	4	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0012	1437	2	2	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0013	1437	2	0	0	0	0	2	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0014	1437	2	2	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0015	1437	2	0	0	2	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0016	1437	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0017	1437	1	1	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0018	1437	1	0	0	0	0	1	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0019	1437	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0020	1437	1	0	0	0	0	1	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0021	1437	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0022	1437	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0023	1437	1	1	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0024	1437	1	0	0	0	0	1	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0025	1437	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0026	1437	1	1	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0027	1437	1	1	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0028	1437	1	1	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0029	1437	1	1	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0030	1437	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	c0031	1437	1	1	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN5_chr6_47777032_47831381	1/1	c0001	1065	318	87	71	107	14	37	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	c0002	1065	1	1	0	0	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	c0003	1065	1	0	1	0	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	c0004	1065	1	0	0	0	0	1	copy fasta	OPN5	chr6	47777032	47831381
OPN5_chr6_47777032_47831381	0/0	c0005	1065	1	0	0	1	0	0	copy fasta	OPN5	chr6	47777032	47831381
OPRD1_chr1_28807170_28876267	0/0	c0001	1119	148	27	34	65	7	15	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/1	c0002	1119	108	46	23	24	5	9	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	c0003	1119	12	0	0	11	0	1	copy fasta	OPRD1	chr1	28807170	28876267