JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OPRD1_chr1_28807170_28876267	0/0	c0004	1119	9	8	1	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	1/0	c0005	1119	7	2	3	0	0	1	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	c0006	1119	6	0	5	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	c0007	1119	5	0	4	0	0	1	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	c0008	1119	4	3	1	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	c0009	1119	2	2	0	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	c0010	1119	1	0	1	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	c0011	1119	1	0	0	0	0	1	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	c0012	1119	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRK1_chr8_53220724_53256637	1/1	c0001	1143	236	41	55	96	12	30	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	c0002	1143	39	9	13	10	3	4	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	c0003	1143	38	1	1	30	1	5	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	c0004	1143	29	17	4	7	0	1	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	c0005	1143	12	12	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	c0006	1143	9	6	1	0	0	2	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	c0007	1143	3	3	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	c0008	1143	1	0	1	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	c0009	1143	1	0	1	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	c0010	1143	1	1	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	c0011	1143	1	0	0	1	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	c0012	1143	1	1	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	c0013	1143	1	1	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRL1_chr20_64075082_64105633	1/1	c0001	1113	60	15	16	6	0	21	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	c0002	1113	1	1	0	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	c0003	1113	1	1	0	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	c0004	1113	1	0	1	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	c0005	1113	1	1	0	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	c0006	1113	1	0	1	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	c0007	1113	1	0	0	0	0	1	copy fasta	OPRL1	chr20	64075082	64105633
OPRM1_chr6_154034240_154137356	1/0	c0001	1203	183	62	42	55	10	13	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/1	c0002	1203	52	0	12	26	4	9	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	c0003	1203	24	24	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	c0004	1203	3	3	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	c0005	1203	2	0	0	1	0	1	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	c0006	1203	1	0	0	0	0	1	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	c0007	1203	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	c0008	1203	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	c0009	1203	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRPN_chr4_70392940_70415195	1/1	c0001	747	356	92	67	139	14	42	copy fasta	OPRPN	chr4	70392940	70415195
OPRPN_chr4_70392940_70415195	0/0	c0002	747	63	0	6	49	2	6	copy fasta	OPRPN	chr4	70392940	70415195
OPRPN_chr4_70392940_70415195	0/0	c0003	747	29	0	4	25	0	0	copy fasta	OPRPN	chr4	70392940	70415195
OPRPN_chr4_70392940_70415195	0/0	c0004	747	2	0	0	2	0	0	copy fasta	OPRPN	chr4	70392940	70415195
OPRPN_chr4_70392940_70415195	0/0	c0005	747	2	1	1	0	0	0	copy fasta	OPRPN	chr4	70392940	70415195
OPRPN_chr4_70392940_70415195	0/0	c0006	747	1	1	0	0	0	0	copy fasta	OPRPN	chr4	70392940	70415195
OPRPN_chr4_70392940_70415195	0/0	c0007	747	1	0	1	0	0	0	copy fasta	OPRPN	chr4	70392940	70415195
OPRPN_chr4_70392940_70415195	0/0	c0008	747	1	0	0	1	0	0	copy fasta	OPRPN	chr4	70392940	70415195
OPRPN_chr4_70392940_70415195	0/0	c0009	747	1	0	1	0	0	0	copy fasta	OPRPN	chr4	70392940	70415195
OPTC_chr1_203489153_203513949	1/0	c0001	999	333	69	66	151	9	37	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/1	c0002	999	50	12	3	29	1	4	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	c0003	999	7	5	1	0	0	1	copy fasta	OPTC	chr1	203489153	203513949