JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OPTC_chr1_203489153_203513949	0/0	c0004	999	4	0	0	1	0	3	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	c0005	999	3	3	0	0	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	c0006	999	2	0	0	2	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	c0007	999	2	0	2	0	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	c0008	999	1	1	0	0	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	c0009	999	1	1	0	0	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	c0010	999	1	0	0	0	0	1	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	c0011	999	1	1	0	0	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	c0012	974	1	0	0	1	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTN_chr10_13095163_13143308	1/0	c0001	1734	313	76	54	139	12	31	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/1	c0002	1734	47	0	13	21	4	8	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	c0003	1734	38	13	3	20	2	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	c0004	1734	8	0	0	8	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	c0005	1734	2	0	0	0	0	2	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	c0006	1734	2	2	0	0	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	c0007	1734	1	0	1	0	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	c0008	1734	1	0	0	0	0	1	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	c0009	1734	1	1	0	0	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	c0010	1734	1	0	0	1	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	c0011	1734	1	0	0	1	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	c0012	1734	1	0	0	1	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	c0013	1734	1	0	1	0	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	c0014	1734	1	0	0	1	0	0	copy fasta	OPTN	chr10	13095163	13143308
OR10A2_chr11_6858057_6879717	0/0	c0001	912	134	19	22	73	4	16	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	c0002	912	131	8	22	78	8	15	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/1	c0003	912	128	9	34	69	4	11	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	1/0	c0004	912	54	48	5	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	c0005	912	8	8	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	c0006	912	5	0	0	5	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	c0007	912	2	2	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	c0008	912	2	2	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	c0009	912	1	0	1	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	c0010	912	1	1	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	c0011	912	1	1	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	c0012	912	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A3_chr11_7932171_7946708	0/1	c0001	945	426	78	81	203	18	45	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	c0002	945	7	7	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	c0003	945	6	6	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	c0004	945	2	1	1	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	c0005	945	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	c0006	945	1	1	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	c0007	945	1	0	0	0	0	1	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	c0008	945	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	c0009	945	1	1	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	c0010	945	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A4_chr11_6871625_6882619	1/0	c0001	948	200	32	25	115	8	19	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0002	948	122	19	21	64	4	14	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/1	c0003	948	63	2	26	25	5	4	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0004	948	27	23	4	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0005	948	9	9	0	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619