JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARAP2_chr4_36061004_36249514	0/0	c0012	5115	2	1	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0013	5115	2	0	0	2	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0014	5115	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0015	5115	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0016	5115	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0017	5115	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0018	5115	1	0	0	0	0	1	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0019	5115	1	0	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0020	5115	1	0	0	1	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0021	5115	1	0	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0022	5115	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0023	5115	1	0	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0024	5115	1	0	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0025	5115	1	0	0	0	0	1	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0026	5115	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	c0027	5115	1	0	0	0	0	1	copy fasta	ARAP2	chr4	36061004	36249514
ARAP3_chr5_141648402_141687230	1/0	c0001	4635	82	2	14	54	4	7	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/1	c0002	4635	66	9	10	35	3	8	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0003	4635	55	5	13	31	0	6	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0004	4635	33	3	7	17	0	6	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0005	4635	30	12	8	7	1	2	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0006	4635	29	28	1	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0007	4635	16	0	6	7	0	3	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0008	4635	15	3	1	7	0	4	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0009	4635	8	5	0	0	2	1	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0010	4635	7	0	5	0	2	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0011	4635	6	6	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0012	4635	5	0	0	5	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0013	4635	4	0	1	0	3	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0014	4635	3	2	1	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0015	4635	3	0	0	0	0	3	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0016	4635	3	0	1	2	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0017	4635	3	3	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0018	4635	3	3	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0019	4635	3	0	0	3	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0020	4635	2	2	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0021	4635	2	2	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0022	4635	2	2	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0023	4623	2	0	2	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0024	4635	2	0	0	0	0	2	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0025	4635	2	0	0	2	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0026	4635	2	1	0	0	0	1	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0027	4635	2	0	0	0	0	2	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0028	4635	2	2	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0029	4635	2	1	1	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0030	4635	1	0	0	0	1	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0031	4635	1	0	0	1	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0032	4622	1	0	0	1	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0033	4635	1	1	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0034	4635	1	1	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230