JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR10A4_chr11_6871625_6882619	0/0	c0006	948	6	0	5	0	1	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0007	948	3	3	0	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0008	948	3	3	0	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0009	948	2	0	0	1	0	1	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0010	948	2	0	0	2	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0011	948	1	0	0	0	0	1	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0012	948	1	1	0	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0013	948	1	0	1	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0014	948	1	1	0	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0015	948	1	0	0	0	0	1	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0016	948	1	1	0	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0017	948	1	0	0	1	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0018	948	1	0	0	1	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	c0019	948	1	0	0	1	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A5_chr11_6840683_6851636	1/1	c0001	954	405	51	70	218	18	46	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	c0002	954	11	10	1	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	c0003	954	8	6	2	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	c0004	954	5	5	0	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	c0005	954	5	5	0	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	c0006	954	4	4	0	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	c0007	954	4	4	0	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	c0008	954	3	0	3	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	c0009	954	1	1	0	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	c0010	954	1	1	0	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	c0011	954	1	0	0	1	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	c0012	954	1	0	0	1	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	c0013	954	1	1	0	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A6_chr11_7919592_7936268	0/0	c0001	945	168	18	27	98	6	19	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/1	c0002	945	150	24	35	64	9	17	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0003	945	79	23	9	35	3	9	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0004	945	15	14	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0005	945	6	0	6	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0006	945	4	1	1	2	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0007	945	3	3	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0008	945	3	3	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0009	945	2	2	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0010	945	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0011	945	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0012	945	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0013	945	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0014	945	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0015	945	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0016	945	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0017	945	1	0	0	0	0	1	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0018	945	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0019	945	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	c0020	945	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A7_chr12_55216025_55226975	1/1	c0001	951	396	93	70	184	12	35	copy fasta	OR10A7	chr12	55216025	55226975
OR10A7_chr12_55216025_55226975	0/0	c0002	951	7	0	0	5	0	2	copy fasta	OR10A7	chr12	55216025	55226975
OR10A7_chr12_55216025_55226975	0/0	c0003	951	3	3	0	0	0	0	copy fasta	OR10A7	chr12	55216025	55226975