JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR10A7_chr12_55216025_55226975	0/0	c0004	951	2	0	2	0	0	0	copy fasta	OR10A7	chr12	55216025	55226975
OR10A7_chr12_55216025_55226975	0/0	c0005	951	2	0	1	0	0	1	copy fasta	OR10A7	chr12	55216025	55226975
OR10A7_chr12_55216025_55226975	0/0	c0006	951	1	0	0	1	0	0	copy fasta	OR10A7	chr12	55216025	55226975
OR10A7_chr12_55216025_55226975	0/0	c0007	951	1	0	1	0	0	0	copy fasta	OR10A7	chr12	55216025	55226975
OR10A7_chr12_55216025_55226975	0/0	c0008	951	1	0	0	1	0	0	copy fasta	OR10A7	chr12	55216025	55226975
OR10A7_chr12_55216025_55226975	0/0	c0009	951	1	0	0	1	0	0	copy fasta	OR10A7	chr12	55216025	55226975
OR10AD1_chr12_48197339_48208292	1/1	c0001	954	219	36	39	109	9	24	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	c0002	955	77	22	13	26	6	10	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	c0003	954	76	11	15	42	1	7	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	c0004	954	11	11	0	0	0	0	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	c0005	954	10	9	1	0	0	0	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	c0006	954	6	4	0	2	0	0	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	c0007	954	5	0	4	0	0	1	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	c0008	954	4	0	0	4	0	0	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	c0009	954	1	0	0	1	0	0	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	c0010	954	1	0	1	0	0	0	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	c0011	954	1	1	0	0	0	0	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	c0012	954	1	0	0	0	0	1	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	c0013	954	1	0	1	0	0	0	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	c0014	954	1	0	0	0	0	1	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AG1_chr11_55960755_55974945	1/1	c0001	966	420	73	71	222	14	38	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	c0002	966	8	4	2	0	2	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	c0003	966	6	6	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	c0004	966	5	5	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	c0005	966	5	4	1	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	c0006	966	2	0	0	0	0	2	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	c0007	966	2	2	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	c0008	966	1	1	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	c0009	966	1	1	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	c0010	966	1	0	1	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	c0011	966	1	0	1	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10C1_chr6_29434306_29445977	0/0	c0001	939	151	43	28	60	7	13	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0002	939	145	19	22	81	4	19	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/1	c0003	939	76	5	13	50	1	6	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0004	939	30	5	3	22	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0005	939	10	10	0	0	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0006	939	6	1	2	0	0	3	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0007	939	6	1	4	0	1	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0008	939	5	4	1	0	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0009	939	5	5	0	0	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0010	939	4	0	0	4	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0011	939	2	0	1	0	1	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0012	939	2	0	0	2	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0013	939	2	0	0	1	0	1	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0014	939	2	1	1	0	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0015	939	2	0	0	0	0	2	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0016	939	1	0	1	0	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0017	939	1	1	0	0	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	c0018	939	1	1	0	0	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10D3_chr11_124178345_124193780	1/0	c0001	939	186	48	43	69	3	22	copy fasta	OR10D3	chr11	124178345	124193780