JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR10D3_chr11_124178345_124193780	0/1	c0002	939	136	22	20	75	8	10	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	c0003	939	85	10	12	48	3	12	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	c0004	939	7	0	0	7	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	c0005	939	6	6	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	c0006	939	3	0	0	3	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	c0007	939	3	3	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	c0008	939	2	2	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	c0009	939	2	2	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	c0010	939	2	0	0	0	0	2	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	c0011	939	1	0	0	1	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	c0012	939	1	0	0	1	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	c0013	939	1	1	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	c0014	939	1	0	1	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10G2_chr14_21628836_21639940	0/1	c0001	933	213	30	38	110	10	24	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	1/0	c0002	933	111	16	18	60	6	10	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0003	933	74	15	9	41	1	8	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0004	933	28	2	19	6	1	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0005	933	12	12	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0006	933	6	0	0	6	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0007	933	6	5	1	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0008	933	6	6	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0009	933	5	5	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0010	933	4	4	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0011	933	2	2	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0012	933	1	0	1	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0013	933	1	1	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0014	933	1	0	0	1	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0015	933	1	0	0	0	0	1	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0016	933	1	1	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0017	933	1	0	0	0	0	1	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	c0018	933	1	1	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G3_chr14_21563520_21585076	0/0	c0001	942	115	8	13	87	0	7	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	1/0	c0002	942	99	23	16	42	3	14	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0003	942	59	8	6	36	2	7	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0004	942	58	26	8	17	3	4	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/1	c0005	942	33	0	24	6	1	1	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0006	942	13	0	0	10	0	3	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0007	942	13	5	1	1	1	5	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0008	942	11	11	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0009	942	9	5	4	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0010	942	9	0	0	9	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0011	942	4	4	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0012	942	4	0	0	0	3	1	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0013	942	4	0	1	0	1	2	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0014	942	4	3	1	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0015	942	2	0	0	0	2	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0016	942	1	0	0	1	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0017	942	1	1	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0018	942	1	0	1	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	c0019	942	1	0	0	1	0	0	copy fasta	OR10G3	chr14	21563520	21585076