JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR10G3_chr14_21563520_21585076	0/0	c0020	942	1	0	1	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G4_chr11_124007997_124023732	0/0	c0001	936	134	24	29	55	7	19	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	1/1	c0002	936	120	40	12	53	4	9	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0003	936	91	4	20	54	5	8	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0004	936	48	5	10	33	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0005	936	10	1	5	0	1	3	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0006	936	6	5	1	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0007	936	4	0	0	4	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0008	933	3	3	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0009	936	3	3	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0010	936	2	1	1	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0011	936	2	2	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0012	936	2	2	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0013	936	1	0	0	0	1	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0014	936	1	0	0	1	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0015	936	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0016	936	1	0	0	1	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0017	936	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0018	936	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0019	936	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0020	933	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0021	936	1	0	0	0	0	1	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0022	936	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0023	936	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0024	936	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	c0025	936	1	0	0	1	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G6_chr11_123989163_124000161	0/0	c0001	999	146	31	30	62	7	16	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	c0002	999	114	6	26	69	3	10	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	1/1	c0003	999	81	11	9	42	5	12	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	c0004	999	54	13	11	30	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	c0005	999	46	22	3	15	1	5	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	c0006	999	7	7	0	0	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	c0007	999	4	0	0	4	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	c0008	999	3	3	0	0	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	c0009	999	2	2	0	0	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	c0010	999	2	0	0	2	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	c0011	999	1	1	0	0	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	c0012	999	1	0	1	0	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	c0013	999	1	0	0	0	0	1	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	c0014	999	1	1	0	0	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	c0015	999	1	1	0	0	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G7_chr11_124031013_124046325	0/0	c0001	936	112	4	22	68	5	13	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	1/1	c0002	936	100	27	14	37	6	14	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0003	936	100	5	25	48	7	15	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0004	936	46	5	12	29	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0005	936	42	17	2	19	0	4	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0006	936	21	4	1	16	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0007	936	10	9	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0008	936	8	8	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0009	936	3	2	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325