JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR10G7_chr11_124031013_124046325	0/0	c0010	936	3	3	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0011	936	3	3	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0012	936	3	3	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0013	936	2	1	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0014	936	2	0	0	2	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0015	936	2	0	0	2	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0016	936	2	0	0	1	0	1	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0017	936	2	0	2	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0018	936	2	1	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0019	936	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0020	936	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0021	936	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0022	936	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0023	936	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0024	936	1	0	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0025	936	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0026	936	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0027	936	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0028	936	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0029	936	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0030	936	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0031	936	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0032	936	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0033	936	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0034	936	1	0	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0035	936	1	0	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0036	936	1	0	0	0	0	1	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	c0037	936	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G8_chr11_124021798_124035634	1/1	c0001	936	304	59	65	125	17	36	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	c0002	936	42	5	11	26	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	c0003	936	41	16	2	17	1	5	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	c0004	936	26	9	1	16	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	c0005	936	16	0	0	16	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	c0006	936	6	5	1	0	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	c0007	936	3	2	1	0	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	c0008	936	1	0	0	1	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	c0009	936	1	1	0	0	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	c0010	936	1	1	0	0	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	c0011	936	1	0	0	1	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	c0012	936	1	1	0	0	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	c0013	936	1	0	0	0	0	1	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	c0014	936	1	0	1	0	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	c0015	936	1	1	0	0	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G9_chr11_124018013_124028948	0/0	c0001	936	97	4	22	60	3	8	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0002	936	86	43	7	30	1	5	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0003	936	83	3	23	43	6	8	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	1/1	c0004	936	69	10	8	33	5	11	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0005	936	49	8	11	30	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0006	936	13	13	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0007	936	9	1	5	0	1	2	copy fasta	OR10G9	chr11	124018013	124028948