JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR10G9_chr11_124018013_124028948	0/0	c0008	936	5	0	0	5	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0009	936	3	2	1	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0010	936	3	3	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0011	936	3	0	0	0	0	3	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0012	936	3	3	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0013	936	2	0	0	0	0	2	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0014	936	2	2	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0015	936	2	2	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0016	936	1	1	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0017	936	1	0	0	1	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0018	936	1	1	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0019	936	1	0	1	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0020	936	1	1	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0021	936	1	1	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0022	936	1	0	1	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0023	936	1	0	0	1	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0024	936	1	0	0	0	0	1	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0025	936	1	1	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0026	936	1	1	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0027	936	1	0	1	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	c0028	936	1	0	0	1	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10H1_chr19_15799549_15820664	1/0	c0001	957	144	15	27	88	3	10	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0002	957	79	4	22	37	2	14	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/1	c0003	957	55	7	10	26	4	7	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0004	957	50	32	8	0	2	8	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0005	957	23	0	5	13	0	5	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0006	957	13	13	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0007	957	5	5	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0008	957	5	5	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0009	957	4	0	2	0	0	2	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0010	957	4	3	1	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0011	957	3	0	0	0	3	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0012	957	3	3	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0013	957	2	2	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0014	957	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0015	957	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0016	957	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0017	957	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0018	957	1	0	1	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0019	957	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0020	957	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	c0021	957	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H2_chr19_15723024_15734052	0/0	c0001	948	119	3	21	90	2	3	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	c0002	948	85	8	18	45	3	11	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	c0003	948	71	39	15	1	4	12	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/1	c0004	948	55	4	12	24	6	8	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	1/0	c0005	948	52	16	12	13	3	7	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	c0006	948	17	17	0	0	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	c0007	948	3	0	0	3	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	c0008	948	2	2	0	0	0	0	copy fasta	OR10H2	chr19	15723024	15734052