JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR10H2_chr19_15723024_15734052	0/0	c0009	948	2	0	2	0	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	c0010	948	1	0	0	0	0	1	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	c0011	948	1	0	0	1	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	c0012	948	1	1	0	0	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	c0013	948	1	1	0	0	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	c0014	948	1	0	0	1	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	c0015	948	1	1	0	0	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	c0016	948	1	0	0	1	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	c0017	948	1	0	0	1	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H3_chr19_15732985_15747343	0/0	c0001	951	135	0	21	110	2	2	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	c0002	951	86	8	21	44	3	10	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	c0003	951	65	36	13	1	4	11	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	1/0	c0004	951	55	16	13	14	3	8	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/1	c0005	951	53	5	8	25	6	8	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	c0006	951	18	18	0	0	0	0	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	c0007	951	2	2	0	0	0	0	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	c0008	941	1	0	0	1	0	0	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	c0009	951	1	1	0	0	0	0	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	c0010	951	1	0	0	0	0	1	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	c0011	951	1	0	0	1	0	0	copy fasta	OR10H3	chr19	15732985	15747343
OR10H4_chr19_15944008_15954958	1/0	c0001	951	308	37	64	155	14	37	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/1	c0002	951	66	34	8	12	4	7	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	c0003	951	10	10	0	0	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	c0004	951	4	4	0	0	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	c0005	951	3	0	0	3	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	c0006	951	3	3	0	0	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	c0007	951	2	0	0	2	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	c0008	951	2	0	0	2	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	c0009	951	1	0	0	1	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	c0010	951	1	0	0	1	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	c0011	951	1	0	1	0	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	c0012	951	1	0	1	0	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	c0013	951	1	1	0	0	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	c0014	951	1	1	0	0	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H5_chr19_15782661_15805357	0/0	c0001	948	115	3	19	89	0	4	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	1/0	c0002	948	99	15	24	41	4	14	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/1	c0003	948	52	9	10	18	6	8	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0004	948	49	26	12	0	2	9	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0005	948	25	2	5	14	0	4	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0006	948	13	13	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0007	948	7	7	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0008	948	6	0	4	0	0	2	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0009	948	5	5	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0010	948	4	4	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0011	948	2	2	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0012	948	2	0	0	0	2	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0013	948	2	1	1	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0014	948	2	2	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0015	948	2	0	0	2	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0016	948	2	1	1	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357