JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR10H5_chr19_15782661_15805357	0/0	c0017	948	2	1	1	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0018	948	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0019	948	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0020	948	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0021	948	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0022	948	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0023	948	1	0	0	0	0	1	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	c0024	948	1	0	1	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10J1_chr1_159434722_159445967	0/1	c0001	930	197	47	46	66	10	27	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	c0002	930	123	34	12	66	0	11	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	c0003	930	65	1	5	53	2	4	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	c0004	930	23	2	9	3	4	5	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	c0005	930	13	0	0	13	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	c0006	930	8	0	0	8	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	c0007	930	8	0	0	8	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	c0008	930	5	5	0	0	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	c0009	930	3	3	0	0	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	1/0	c0010	930	2	1	0	0	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	c0011	930	2	2	0	0	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	c0012	930	2	0	2	0	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	c0013	930	2	0	2	0	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	c0014	930	1	1	0	0	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	c0015	930	1	0	0	0	0	1	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	c0016	930	1	0	0	1	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J5_chr1_159530078_159541007	0/0	c0001	930	237	22	50	127	8	30	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	1/0	c0002	930	157	49	12	86	1	8	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/1	c0003	930	26	2	11	1	4	7	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/0	c0004	930	8	8	0	0	0	0	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/0	c0005	930	1	0	1	0	0	0	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/0	c0006	930	1	1	0	0	0	0	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/0	c0007	930	1	1	0	0	0	0	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/0	c0008	930	1	0	0	0	1	0	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/0	c0009	930	1	0	0	0	0	1	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/0	c0010	930	1	1	0	0	0	0	copy fasta	OR10J5	chr1	159530078	159541007
OR10K1_chr1_158456834_158472458	1/1	c0001	942	405	69	68	204	15	47	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	c0002	942	12	0	3	8	0	1	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	c0003	942	9	3	5	0	1	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	c0004	942	9	8	1	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	c0005	942	5	4	1	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	c0006	942	4	4	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	c0007	942	2	2	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	c0008	942	1	1	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	c0009	942	1	1	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	c0010	942	1	1	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	c0011	942	1	1	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K2_chr1_158413210_158431237	1/1	c0001	939	289	68	53	126	9	31	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	c0002	939	103	20	20	43	7	13	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	c0003	939	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	c0004	939	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	c0005	939	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237