JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR10K2_chr1_158413210_158431237	0/0	c0006	939	1	0	0	0	0	1	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	c0007	939	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	c0008	939	1	0	0	1	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	c0009	939	1	0	0	0	0	1	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	c0010	939	1	0	1	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10P1_chr12_55631892_55642833	1/1	c0001	942	194	57	36	77	6	16	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0002	942	108	3	9	79	1	16	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0003	942	71	6	26	19	9	11	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0004	942	31	1	1	29	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0005	942	11	11	0	0	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0006	942	6	5	1	0	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0007	942	5	5	0	0	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0008	942	2	1	1	0	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0009	942	2	2	0	0	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0010	942	2	2	0	0	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0011	942	1	0	0	1	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0012	942	1	0	0	1	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0013	942	1	0	0	1	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0014	942	1	1	0	0	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0015	942	1	0	0	1	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	c0016	942	1	0	0	0	0	1	copy fasta	OR10P1	chr12	55631892	55642833
OR10Q1_chr11_58222882_58233918	0/0	c0001	960	236	33	41	130	7	25	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	0/1	c0002	960	99	11	26	41	4	16	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	0/0	c0003	960	72	20	11	34	3	4	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	1/0	c0004	960	27	19	1	5	1	0	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	0/0	c0005	960	11	9	2	0	0	0	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	0/0	c0006	960	4	4	0	0	0	0	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	0/0	c0007	954	3	0	1	0	1	1	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	0/0	c0008	960	2	2	0	0	0	0	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	0/0	c0009	960	1	1	0	0	0	0	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	0/0	c0010	960	1	1	0	0	0	0	copy fasta	OR10Q1	chr11	58222882	58233918
OR10R2_chr1_158467220_158485936	1/1	c0001	975	212	43	36	97	7	27	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0002	975	104	11	19	60	4	10	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0003	975	83	12	10	47	4	10	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0004	975	12	10	2	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0005	975	7	2	4	0	1	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0006	975	6	6	0	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0007	975	6	0	4	2	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0008	975	4	4	0	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0009	975	4	3	0	0	0	1	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0010	975	2	2	0	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0011	975	1	0	0	1	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0012	975	1	1	0	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0013	975	1	1	0	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0014	975	1	0	1	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0015	975	1	1	0	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	c0016	975	1	0	0	1	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10S1_chr11_123971661_123982781	1/1	c0001	969	356	67	55	180	9	43	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	c0002	969	50	4	14	26	2	4	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	c0003	969	19	9	6	0	1	3	copy fasta	OR10S1	chr11	123971661	123982781