JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR10S1_chr11_123971661_123982781	0/0	c0004	969	7	6	1	0	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	c0005	969	4	4	0	0	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	c0006	969	4	4	0	0	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	c0007	969	2	0	0	2	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	c0008	969	2	0	0	0	2	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	c0009	969	1	1	0	0	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	c0010	969	1	1	0	0	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	c0011	969	1	0	0	1	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	c0012	969	1	0	0	1	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10T2_chr1_158393522_158404466	1/1	c0001	945	257	42	44	138	7	24	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0002	945	65	13	18	24	0	10	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0003	945	56	1	9	37	1	8	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0004	945	21	13	2	0	6	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0005	945	9	9	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0006	945	7	7	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0007	945	5	0	3	0	2	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0008	945	3	3	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0009	945	2	2	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0010	945	2	0	0	0	0	2	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0011	945	2	2	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0012	945	2	0	0	0	0	2	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0013	945	2	2	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0014	945	2	2	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0015	945	1	0	1	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0016	945	1	0	0	1	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0017	945	1	1	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0018	945	1	0	0	1	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0019	945	1	1	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0020	945	1	0	0	1	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	c0021	945	1	0	1	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10V1_chr11_59707916_59718845	0/1	c0001	930	321	50	60	163	11	36	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	c0002	930	32	2	13	15	0	2	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	c0003	930	15	15	0	0	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	c0004	930	11	10	1	0	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	1/0	c0005	930	10	1	4	0	3	1	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	c0006	930	9	3	2	3	0	1	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	c0007	930	9	9	0	0	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	c0008	930	9	0	0	9	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	c0009	930	3	0	0	3	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	c0010	930	3	3	0	0	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	c0011	930	2	0	0	2	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	c0012	930	1	1	0	0	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	c0013	930	1	0	0	1	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	c0014	930	1	0	0	1	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	c0015	930	1	0	0	1	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10W1_chr11_58261792_58273260	1/1	c0001	918	166	38	34	68	7	17	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	c0002	918	151	29	25	75	6	16	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	c0003	918	22	16	0	5	1	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	c0004	918	10	9	1	0	0	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	c0005	918	5	0	0	0	0	5	copy fasta	OR10W1	chr11	58261792	58273260