JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARAP3_chr5_141648402_141687230	0/0	c0035	4635	1	0	1	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0036	4635	1	1	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0037	4635	1	0	0	1	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0038	4635	1	1	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0039	4635	1	1	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0040	4635	1	0	0	0	0	1	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0041	4635	1	0	1	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0042	4635	1	0	1	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0043	4635	1	1	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0044	4635	1	0	1	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0045	4635	1	0	1	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0046	4635	1	0	0	1	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0047	4635	1	1	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0048	4635	1	0	0	1	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0049	4635	1	1	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0050	4635	1	0	0	1	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	c0051	4635	1	1	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARCN1_chr11_118567409_118608033	1/1	c0001	1536	253	73	62	80	13	23	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	c0002	1536	112	17	4	77	1	13	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	c0003	1536	1	0	0	1	0	0	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	c0004	1536	1	0	0	0	0	1	copy fasta	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	c0005	1536	1	0	0	0	0	1	copy fasta	ARCN1	chr11	118567409	118608033
ARC_chr8_142606049_142619479	0/1	c0001	1191	212	58	36	82	13	22	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	c0002	1191	185	29	40	89	3	24	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	c0003	1192	8	0	2	6	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	c0004	1191	6	6	0	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	1/0	c0005	1191	2	1	0	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	c0006	1191	2	0	0	0	0	2	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	c0007	1191	2	2	0	0	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	c0008	1192	2	0	0	2	0	0	copy fasta	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	c0009	1191	1	0	0	1	0	0	copy fasta	ARC	chr8	142606049	142619479
AREG_chr4_74440136_74460005	1/1	c0001	759	336	81	59	143	16	35	copy fasta	AREG	chr4	74440136	74460005
AREG_chr4_74440136_74460005	0/0	c0002	759	56	0	0	53	0	3	copy fasta	AREG	chr4	74440136	74460005
AREG_chr4_74440136_74460005	0/0	c0003	759	30	5	6	16	0	3	copy fasta	AREG	chr4	74440136	74460005
AREG_chr4_74440136_74460005	0/0	c0004	759	3	0	0	0	0	3	copy fasta	AREG	chr4	74440136	74460005
AREG_chr4_74440136_74460005	0/0	c0005	759	1	0	0	1	0	0	copy fasta	AREG	chr4	74440136	74460005
AREG_chr4_74440136_74460005	0/0	c0006	759	1	0	1	0	0	0	copy fasta	AREG	chr4	74440136	74460005
AREG_chr4_74440136_74460005	0/0	c0007	759	1	0	0	1	0	0	copy fasta	AREG	chr4	74440136	74460005
AREL1_chr14_74656256_74718080	1/1	c0001	2472	346	81	64	158	12	29	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	c0002	2472	7	0	0	7	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	c0003	2472	4	4	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	c0004	2472	4	4	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	c0005	2472	4	3	1	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	c0006	2472	2	0	1	0	0	1	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	c0007	2472	1	0	0	1	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	c0008	2472	1	0	1	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	c0009	2472	1	1	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	c0010	2472	1	1	0	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	c0011	2472	1	0	1	0	0	0	copy fasta	AREL1	chr14	74656256	74718080
AREL1_chr14_74656256_74718080	0/0	c0012	2472	1	0	0	1	0	0	copy fasta	AREL1	chr14	74656256	74718080