JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR10W1_chr11_58261792_58273260	0/0	c0006	918	2	2	0	0	0	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	c0007	918	2	0	2	0	0	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	c0008	918	1	0	0	1	0	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	c0009	918	1	0	1	0	0	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	c0010	918	1	0	0	1	0	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	c0011	918	1	0	1	0	0	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10X1_chr1_158573919_158584899	0/0	c0001	981	199	40	34	96	8	21	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	1/1	c0002	981	193	28	42	95	7	19	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	c0003	981	9	9	0	0	0	0	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	c0004	981	7	7	0	0	0	0	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	c0005	981	7	2	4	0	1	0	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	c0006	981	5	5	0	0	0	0	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	c0007	981	5	5	0	0	0	0	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	c0008	981	1	1	0	0	0	0	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	c0009	981	1	0	0	0	0	1	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	c0010	981	1	0	0	0	0	1	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	c0011	981	1	1	0	0	0	0	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	c0012	981	1	0	0	1	0	0	copy fasta	OR10X1	chr1	158573919	158584899
OR10Z1_chr1_158600268_158617514	1/0	c0001	942	248	65	41	103	10	28	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	c0002	942	122	10	27	73	4	8	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/1	c0003	942	53	4	9	28	1	10	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	c0004	942	13	13	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	c0005	942	4	0	3	0	1	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	c0006	942	3	3	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	c0007	942	1	0	0	0	0	1	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	c0008	942	1	0	0	0	0	1	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	c0009	942	1	1	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR11A1_chr6_29420504_29462071	0/0	c0001	948	349	71	59	174	8	37	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/1	c0002	948	42	4	14	15	2	6	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	c0003	948	28	3	2	23	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	c0004	948	16	14	1	1	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	c0005	948	3	3	0	0	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	c0006	948	1	0	0	1	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	c0007	948	1	0	0	0	0	1	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	c0008	948	1	1	0	0	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11G2_chr14_20185896_20206075	0/0	c0001	937	181	17	27	108	10	19	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	c0002	936	90	17	26	29	6	12	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/1	c0003	937	74	37	15	9	2	10	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	1/0	c0004	936	57	0	8	42	0	6	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	c0005	936	34	3	2	29	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	c0006	936	14	12	2	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	c0007	937	8	0	0	8	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	c0008	938	6	5	1	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	c0009	936	6	1	3	1	0	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	c0010	937	4	0	0	4	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	c0011	936	2	0	0	2	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	c0012	936	2	2	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	c0013	937	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	c0014	936	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	c0015	937	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075