JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR11G2_chr14_20185896_20206075	0/0	c0016	936	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11H12_chr14_18596117_18607097	1/1	c0001	981	180	27	33	93	4	21	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0002	981	85	25	11	39	2	8	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0003	981	16	6	2	6	0	2	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0004	981	11	0	2	8	0	1	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0005	981	8	0	0	8	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0006	981	4	3	1	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0007	981	4	0	0	4	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0008	981	3	0	3	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0009	981	2	0	0	0	0	2	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0010	981	2	2	0	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0011	981	1	0	1	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0012	981	1	1	0	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0013	981	1	1	0	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0014	981	1	0	1	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0015	981	1	1	0	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0016	981	1	0	0	1	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0017	981	1	0	0	1	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0018	981	1	1	0	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0019	981	1	0	0	1	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0020	981	1	1	0	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	c0021	981	1	0	0	1	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H1_chr22_15523192_15534139	1/0	c0001	948	102	27	18	42	5	9	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0002	948	44	0	1	38	0	5	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0003	948	43	4	8	20	5	6	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0004	948	42	12	2	24	1	3	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0005	948	6	2	1	1	0	2	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0006	948	4	0	1	2	0	1	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0007	948	3	0	1	1	1	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0008	948	3	0	1	0	2	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0009	948	3	0	0	3	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0010	948	2	2	0	0	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0011	948	2	0	2	0	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0012	948	1	0	0	0	0	1	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0013	948	1	0	0	1	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0014	948	1	0	0	1	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0015	948	1	1	0	0	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0016	948	1	0	1	0	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0017	948	1	1	0	0	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0018	948	1	0	0	1	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0019	948	1	1	0	0	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	c0020	948	1	0	0	0	0	1	copy fasta	OR11H1	chr22	15523192	15534139
OR11H2_chr14_19707936_19718883	0/1	c0001	948	66	4	13	42	2	4	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0002	948	42	10	10	15	2	5	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0003	948	36	4	2	30	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	1/0	c0004	948	30	10	5	12	2	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0005	948	22	1	6	8	5	2	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0006	948	20	6	4	9	1	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0007	948	4	0	0	4	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0008	948	3	2	1	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883