JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR11H2_chr14_19707936_19718883	0/0	c0009	948	3	0	0	3	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0010	948	2	2	0	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0011	948	1	0	1	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0012	948	1	0	0	1	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0013	948	1	0	0	0	0	1	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0014	948	1	1	0	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0015	948	1	0	0	1	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0016	948	1	1	0	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0017	948	1	1	0	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0018	948	1	1	0	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0019	948	1	0	0	1	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	c0020	948	1	1	0	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H4_chr14_20234286_20249349	1/0	c0001	945	394	72	67	201	13	40	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0002	945	20	2	10	2	5	1	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0003	945	8	0	0	8	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0004	945	3	0	1	0	0	2	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0005	945	2	2	0	0	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0006	945	2	2	0	0	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0007	945	1	0	1	0	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0008	945	1	1	0	0	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0009	945	1	1	0	0	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0010	945	1	0	0	0	0	1	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0011	945	1	0	1	0	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0012	945	1	0	0	1	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0013	945	1	0	0	1	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0014	945	1	0	0	0	0	1	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0015	945	1	0	0	0	0	1	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	c0016	945	1	0	0	1	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H6_chr14_20218710_20229702	1/0	c0001	993	221	10	48	137	5	20	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	c0002	993	132	39	21	53	8	11	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	c0003	993	45	13	3	15	1	13	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	c0004	993	36	22	5	6	0	3	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/1	c0005	993	8	1	3	1	2	0	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	c0006	993	2	0	0	1	0	1	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	c0007	993	2	2	0	0	0	0	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	c0008	993	1	0	1	0	0	0	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	c0009	993	1	0	0	1	0	0	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	c0010	993	1	0	1	0	0	0	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	c0011	993	1	1	0	0	0	0	copy fasta	OR11H6	chr14	20218710	20229702
OR11L1_chr1_247835928_247846896	0/1	c0001	969	332	54	71	148	15	43	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	c0002	969	15	11	4	0	0	0	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	c0003	969	14	10	4	0	0	0	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	c0004	969	12	5	4	1	0	2	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	c0005	969	6	6	0	0	0	0	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	c0006	969	5	5	0	0	0	0	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	c0007	969	2	0	0	0	0	2	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	c0008	969	2	1	1	0	0	0	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	1/0	c0009	969	1	0	0	0	0	0	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	c0010	969	1	0	0	0	1	0	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	c0011	969	1	0	0	1	0	0	copy fasta	OR11L1	chr1	247835928	247846896