JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR11L1_chr1_247835928_247846896	0/0	c0012	969	1	0	0	0	0	1	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	c0013	969	1	0	0	1	0	0	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	c0014	969	1	0	0	1	0	0	copy fasta	OR11L1	chr1	247835928	247846896
OR12D2_chr6_29390631_29403008	0/0	c0001	924	283	51	52	137	9	34	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0002	924	63	11	7	39	1	5	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/1	c0003	924	56	5	8	32	1	9	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0004	924	13	0	7	6	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0005	924	13	11	1	1	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0006	924	6	0	3	0	3	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0007	924	5	4	1	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0008	924	3	3	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0009	924	2	2	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0010	924	2	2	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0011	924	2	2	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0012	924	2	1	1	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0013	924	1	1	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0014	924	1	1	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0015	924	1	1	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0016	924	1	0	0	1	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	c0017	924	1	1	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D3_chr6_29368423_29380291	0/1	c0001	951	229	77	38	88	8	17	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	c0002	951	101	2	26	56	3	14	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	c0003	951	57	14	6	33	0	4	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	c0004	951	21	2	3	9	0	7	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	c0005	951	21	0	4	16	1	0	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	c0006	951	3	2	1	0	0	0	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	c0007	951	2	0	0	0	0	2	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	c0008	951	1	1	0	0	0	0	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	c0009	951	1	0	0	1	0	0	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	c0010	951	1	0	0	1	0	0	copy fasta	OR12D3	chr6	29368423	29380291
OR13A1_chr10_45297650_45320608	0/1	c0001	987	347	35	64	193	16	38	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	c0002	987	35	33	2	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	c0003	987	13	13	0	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	c0004	988	7	3	4	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	c0005	987	5	5	0	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	c0006	987	3	3	0	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	c0007	987	2	1	1	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	c0008	987	2	1	1	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	c0009	987	1	0	0	1	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	c0010	987	1	0	1	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	c0011	987	1	0	0	1	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	c0012	987	1	1	0	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	c0013	987	1	1	0	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	c0014	988	1	0	1	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	c0015	987	1	0	0	1	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13C2_chr9_104599671_104610627	0/0	c0000	0	1	1	0	0	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	c0001	951	162	38	10	94	4	16	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	c0002	957	121	8	27	71	7	8	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	1/1	c0003	957	74	19	28	5	6	14	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	c0004	955	23	12	1	9	0	1	copy fasta	OR13C2	chr9	104599671	104610627