JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR13C2_chr9_104599671_104610627	0/0	c0005	951	7	0	0	7	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	c0006	957	6	6	0	0	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	c0007	955	5	4	1	0	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	c0008	955	4	4	0	0	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	c0009	957	2	0	0	2	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	c0010	951	1	1	0	0	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	c0011	951	1	0	1	0	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	c0012	951	1	1	0	0	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	c0013	951	1	0	0	0	0	1	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	c0014	951	1	0	0	0	1	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	c0015	955	1	1	0	0	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	c0016	715	1	1	0	0	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C3_chr9_104530749_104541856	1/1	c0001	954	326	57	62	158	14	33	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0002	954	47	18	6	19	1	3	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0003	954	39	3	1	34	0	1	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0004	954	13	5	0	8	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0005	954	11	0	8	3	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0006	954	4	4	0	0	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0007	954	3	2	1	0	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0008	954	2	2	0	0	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0009	954	2	2	0	0	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0010	954	1	0	0	0	0	1	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0011	954	1	0	0	0	1	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0012	954	1	0	0	1	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0013	954	1	0	0	1	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0014	954	1	1	0	0	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0015	954	1	1	0	0	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0016	954	1	1	0	0	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0017	954	1	0	0	1	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	c0018	954	1	0	0	1	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C4_chr9_104521253_104532209	1/1	c0001	957	429	89	70	213	15	40	copy fasta	OR13C4	chr9	104521253	104532209
OR13C4_chr9_104521253_104532209	0/0	c0002	957	12	0	0	12	0	0	copy fasta	OR13C4	chr9	104521253	104532209
OR13C4_chr9_104521253_104532209	0/0	c0003	957	9	0	0	9	0	0	copy fasta	OR13C4	chr9	104521253	104532209
OR13C4_chr9_104521253_104532209	0/0	c0004	957	4	3	1	0	0	0	copy fasta	OR13C4	chr9	104521253	104532209
OR13C4_chr9_104521253_104532209	0/0	c0005	957	2	2	0	0	0	0	copy fasta	OR13C4	chr9	104521253	104532209
OR13C4_chr9_104521253_104532209	0/0	c0006	957	1	0	1	0	0	0	copy fasta	OR13C4	chr9	104521253	104532209
OR13C4_chr9_104521253_104532209	0/0	c0007	957	1	0	0	0	1	0	copy fasta	OR13C4	chr9	104521253	104532209
OR13C5_chr9_104593457_104604413	0/0	c0001	956	125	5	11	92	5	12	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0002	957	122	5	25	78	6	8	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	1/1	c0003	957	67	13	28	3	6	15	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0004	956	44	29	0	11	0	4	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0005	956	18	17	1	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0006	956	14	4	0	9	0	1	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0007	957	6	6	0	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0008	956	5	4	1	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0009	956	4	4	0	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0010	648	3	0	0	3	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0011	957	3	3	0	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0012	957	3	2	1	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0013	957	2	0	1	0	1	0	copy fasta	OR13C5	chr9	104593457	104604413