JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR13C5_chr9_104593457_104604413	0/0	c0014	765	1	0	0	1	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0015	957	1	0	0	1	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0016	957	1	0	0	1	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0017	957	1	0	0	1	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0018	956	1	1	0	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0019	956	1	0	0	1	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0020	957	1	1	0	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	c0021	957	1	0	0	1	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C8_chr9_104564168_104575130	0/0	c0001	963	300	49	41	182	5	23	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	1/0	c0002	963	103	37	29	16	4	16	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	c0003	963	7	0	0	7	0	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	c0004	963	5	4	1	0	0	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	c0005	963	4	0	0	4	0	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	c0006	963	2	0	0	2	0	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	c0007	963	2	0	1	0	1	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	c0008	963	2	0	0	0	2	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	c0009	963	2	0	1	0	0	1	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	c0010	963	1	1	0	0	0	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	c0011	963	1	0	0	1	0	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	c0012	963	1	0	1	0	0	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	c0013	963	1	1	0	0	0	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/1	c0014	963	1	0	0	0	0	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C9_chr9_104612248_104623204	0/0	c0001	957	161	35	10	94	5	17	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	c0002	957	113	5	27	66	7	8	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	1/1	c0003	957	83	22	30	5	6	18	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	c0004	957	26	16	1	8	0	1	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	c0005	957	8	0	0	8	0	0	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	c0006	957	6	5	1	0	0	0	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	c0007	957	5	5	0	0	0	0	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	c0008	957	4	3	1	0	0	0	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	c0009	957	2	2	0	0	0	0	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	c0010	957	1	1	0	0	0	0	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	c0011	957	1	0	0	1	0	0	copy fasta	OR13C9	chr9	104612248	104623204
OR13D1_chr9_104689518_104700462	0/0	c0001	945	142	30	30	72	6	4	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0002	945	127	16	18	76	3	14	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	1/1	c0003	945	56	13	22	2	5	12	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0004	945	35	25	0	8	0	2	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0005	945	7	0	3	0	0	4	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0006	949	6	5	1	0	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0007	945	3	3	0	0	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0008	945	3	0	0	2	0	1	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0009	945	3	3	0	0	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0010	945	2	2	0	0	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0011	945	2	0	0	2	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0012	945	2	0	0	2	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0013	945	1	1	0	0	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0014	945	1	1	0	0	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0015	945	1	1	0	0	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0016	945	1	0	0	0	0	1	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0017	945	1	0	0	0	0	1	copy fasta	OR13D1	chr9	104689518	104700462