JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR13D1_chr9_104689518_104700462	0/0	c0018	945	1	0	0	1	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0019	945	1	0	0	1	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	c0020	992	1	0	0	0	0	1	copy fasta	OR13D1	chr9	104689518	104700462
OR13F1_chr9_104499263_104510222	0/1	c0001	960	175	43	36	66	8	21	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0002	960	127	27	11	82	0	7	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	1/0	c0003	960	92	4	21	50	6	10	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0004	960	8	5	3	0	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0005	960	8	0	0	8	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0006	960	7	6	1	0	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0007	960	6	2	2	2	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0008	960	5	4	1	0	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0009	960	2	0	0	0	0	2	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0010	960	1	1	0	0	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0011	960	1	1	0	0	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0012	960	1	0	0	0	1	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0013	960	1	0	0	1	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0014	960	1	0	0	1	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0015	960	1	0	0	1	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0016	960	1	1	0	0	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0017	960	1	0	0	1	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0018	960	1	0	1	0	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	c0019	960	1	0	0	0	1	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13G1_chr1_247665812_247684739	0/1	c0001	924	182	12	39	103	7	20	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	c0002	924	128	22	13	71	4	18	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	1/0	c0003	924	60	31	13	6	4	5	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	c0004	924	10	9	1	0	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	c0005	924	9	0	5	0	3	1	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	c0006	924	7	0	0	7	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	c0007	924	6	6	0	0	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	c0008	924	6	5	1	0	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	c0009	924	3	3	0	0	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	c0010	924	2	0	0	2	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	c0011	924	1	0	0	1	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13H1_chrX_131539074_131550000	0/0	c0001	927	176	65	17	73	4	17	copy fasta	OR13H1	chrX	131539074	131550000
OR13H1_chrX_131539074_131550000	1/1	c0002	927	102	11	26	54	4	5	copy fasta	OR13H1	chrX	131539074	131550000
OR13H1_chrX_131539074_131550000	0/0	c0003	927	39	1	12	11	5	10	copy fasta	OR13H1	chrX	131539074	131550000
OR13H1_chrX_131539074_131550000	0/0	c0004	927	1	1	0	0	0	0	copy fasta	OR13H1	chrX	131539074	131550000
OR13H1_chrX_131539074_131550000	0/0	c0005	927	1	0	0	1	0	0	copy fasta	OR13H1	chrX	131539074	131550000
OR13H1_chrX_131539074_131550000	0/0	c0006	927	1	0	0	1	0	0	copy fasta	OR13H1	chrX	131539074	131550000
OR13J1_chr9_35864463_35875401	0/0	c0001	939	207	51	24	114	4	14	copy fasta	OR13J1	chr9	35864463	35875401
OR13J1_chr9_35864463_35875401	1/1	c0002	939	163	20	35	82	7	17	copy fasta	OR13J1	chr9	35864463	35875401
OR13J1_chr9_35864463_35875401	0/0	c0003	939	70	3	20	31	5	11	copy fasta	OR13J1	chr9	35864463	35875401
OR13J1_chr9_35864463_35875401	0/0	c0004	939	14	13	1	0	0	0	copy fasta	OR13J1	chr9	35864463	35875401
OR13J1_chr9_35864463_35875401	0/0	c0005	939	3	3	0	0	0	0	copy fasta	OR13J1	chr9	35864463	35875401
OR13J1_chr9_35864463_35875401	0/0	c0006	939	2	1	1	0	0	0	copy fasta	OR13J1	chr9	35864463	35875401
OR13J1_chr9_35864463_35875401	0/0	c0007	939	1	1	0	0	0	0	copy fasta	OR13J1	chr9	35864463	35875401
OR13J1_chr9_35864463_35875401	0/0	c0008	916	1	0	1	0	0	0	copy fasta	OR13J1	chr9	35864463	35875401
OR13J1_chr9_35864463_35875401	0/0	c0009	939	1	0	0	1	0	0	copy fasta	OR13J1	chr9	35864463	35875401
OR14A16_chr1_247809660_247829119	0/1	c0001	927	209	14	46	113	8	27	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	0/0	c0002	930	39	33	4	0	2	0	copy fasta	OR14A16	chr1	247809660	247829119