JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR14A16_chr1_247809660_247829119	0/0	c0003	927	30	2	18	0	4	6	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	0/0	c0004	930	25	18	5	1	0	1	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	0/0	c0005	930	12	3	0	8	0	1	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	0/0	c0006	930	11	8	3	0	0	0	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	0/0	c0007	930	8	7	1	0	0	0	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	0/0	c0008	927	5	3	1	0	0	1	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	0/0	c0009	930	1	1	0	0	0	0	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	0/0	c0010	930	1	1	0	0	0	0	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	1/0	c0011	930	1	0	0	0	0	0	copy fasta	OR14A16	chr1	247809660	247829119
OR14A2_chr1_247717957_247753141	1/1	c0001	945	278	48	42	144	13	29	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	c0002	945	26	12	4	9	0	1	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	c0003	945	21	17	4	0	0	0	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	c0004	945	10	5	4	0	0	1	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	c0005	945	5	0	3	0	1	1	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	c0006	945	4	4	0	0	0	0	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	c0007	945	3	0	3	0	0	0	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	c0008	945	1	0	0	1	0	0	copy fasta	OR14A2	chr1	247717957	247753141
OR14C36_chr1_248343775_248354713	0/0	c0001	939	189	26	33	99	8	23	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	1/0	c0002	939	123	51	20	45	4	2	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/1	c0003	939	106	8	19	61	4	13	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/0	c0004	938	13	0	0	13	0	0	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/0	c0005	939	8	7	1	0	0	0	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/0	c0006	939	3	3	0	0	0	0	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/0	c0007	939	2	0	2	0	0	0	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/0	c0008	939	1	1	0	0	0	0	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/0	c0009	939	1	1	0	0	0	0	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/0	c0010	939	1	1	0	0	0	0	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/0	c0011	939	1	0	1	0	0	0	copy fasta	OR14C36	chr1	248343775	248354713
OR14J1_chr6_29296701_29318017	0/1	c0001	966	286	64	41	148	9	23	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	c0002	966	149	27	33	69	5	15	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	c0003	966	7	3	2	0	0	2	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	c0004	966	2	0	0	2	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	c0005	966	1	0	0	0	0	1	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	c0006	966	1	0	0	0	0	1	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	c0007	966	1	0	0	1	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14K1_chr1_247733615_247744559	1/1	c0001	945	372	67	70	181	16	36	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	c0002	945	7	5	2	0	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	c0003	945	4	4	0	0	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	c0004	945	2	2	0	0	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	c0005	945	2	2	0	0	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	c0006	945	1	0	0	1	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	c0007	945	1	0	0	1	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	c0008	945	1	0	0	1	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	c0009	945	1	0	0	1	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	c0010	945	1	0	0	1	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14L1_chr1_247612143_247627372	1/1	c0001	978	379	59	73	187	16	42	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	c0002	978	17	15	2	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	c0003	978	15	1	8	0	2	4	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	c0004	979	9	8	1	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	c0005	978	4	0	0	4	0	0	copy fasta	OR14L1	chr1	247612143	247627372