JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR14L1_chr1_247612143_247627372	0/0	c0006	978	3	3	0	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	c0007	978	2	0	0	2	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	c0008	978	1	0	0	0	0	1	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	c0009	978	1	0	0	0	0	1	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	c0010	978	1	0	0	1	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	c0011	979	1	1	0	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	c0012	979	1	1	0	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR1A1_chr17_3202667_3223896	0/0	c0001	930	147	8	13	108	6	12	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	1/0	c0002	930	102	23	14	59	1	4	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	c0003	930	81	18	18	32	2	11	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/1	c0004	930	37	6	16	0	3	11	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	c0005	930	21	0	11	0	2	8	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	c0006	930	17	16	1	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	c0007	930	10	10	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	c0008	930	9	8	1	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	c0009	930	4	0	0	4	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	c0010	930	3	2	0	0	1	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	c0011	930	1	1	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	c0012	930	1	0	0	0	1	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	c0013	930	1	0	0	1	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A2_chr17_3192519_3203448	0/1	c0001	930	142	33	29	52	4	23	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	c0002	930	124	2	18	88	5	11	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	1/0	c0003	930	79	8	16	47	2	5	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	c0004	930	47	20	15	0	3	9	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	c0005	930	14	13	1	0	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	c0006	930	9	0	0	9	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	c0007	930	6	5	1	0	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	c0008	919	4	4	0	0	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	c0009	930	2	2	0	0	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	c0010	930	1	0	0	1	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	c0011	930	1	0	0	1	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	c0012	939	1	1	0	0	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1B1_chr9_122623125_122662627	0/1	c0001	955	91	19	18	24	6	23	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0002	954	87	3	20	45	4	15	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0003	954	66	0	10	48	1	7	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	1/0	c0004	954	61	29	15	9	4	3	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0005	955	54	0	0	54	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0006	954	21	8	9	4	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0007	954	13	11	2	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0008	954	6	0	0	6	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0009	955	6	6	0	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0010	955	4	0	3	0	1	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0011	954	3	3	0	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0012	955	1	1	0	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0013	954	1	1	0	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0014	954	1	0	1	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0015	954	1	0	0	1	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0016	954	1	0	0	1	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0017	954	1	0	0	1	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	c0018	955	1	1	0	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627