JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR1B1_chr9_122623125_122662627	0/0	c0019	955	1	0	0	1	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1C1_chr1_247749846_247765556	0/1	c0001	945	289	32	60	145	16	35	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	c0002	945	72	11	5	49	0	7	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	1/0	c0003	945	61	35	11	12	0	2	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	c0004	945	8	0	6	0	2	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	c0005	945	5	5	0	0	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	c0006	945	2	1	1	0	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	c0007	945	2	2	0	0	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	c0008	945	1	0	0	1	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	c0009	945	1	0	0	1	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	c0010	945	1	0	0	0	0	1	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	c0011	945	1	0	1	0	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	c0012	945	1	0	0	0	0	1	copy fasta	OR1C1	chr1	247749846	247765556
OR1D2_chr17_3083484_3109422	1/1	c0001	939	297	37	55	156	12	35	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	c0002	939	41	23	12	4	0	2	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	c0003	939	29	16	4	0	4	5	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	c0004	939	9	7	1	0	0	1	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	c0005	939	8	8	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	c0006	939	3	3	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	c0007	939	2	0	0	2	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	c0008	939	1	0	0	1	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	c0009	939	1	0	0	0	0	1	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	c0010	939	1	1	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	c0011	939	1	0	0	1	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	c0012	939	1	1	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D5_chr17_3057669_3068607	0/1	c0001	939	188	13	34	111	9	20	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	1/0	c0002	939	180	39	37	74	5	24	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0003	939	23	1	6	12	1	3	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0004	939	16	15	1	0	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0005	939	9	8	1	0	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0006	938	9	8	1	0	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0007	939	5	5	0	0	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0008	939	3	1	0	0	0	2	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0009	939	2	0	0	2	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0010	939	1	0	0	1	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0011	939	1	0	0	1	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0012	939	1	0	0	0	0	1	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0013	939	1	1	0	0	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0014	939	1	0	0	1	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0015	939	1	1	0	0	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0016	939	1	0	0	1	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0017	939	1	0	0	1	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	c0018	939	1	0	0	0	1	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1E1_chr17_3392104_3403410	0/0	c0001	945	151	25	24	80	6	16	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	1/0	c0002	945	114	28	24	38	7	16	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0003	945	76	11	4	54	1	6	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0004	945	9	9	0	0	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0005	945	4	4	0	0	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0006	945	3	3	0	0	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0007	945	3	0	0	3	0	0	copy fasta	OR1E1	chr17	3392104	3403410