JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR1E1_chr17_3392104_3403410	0/0	c0008	945	3	3	0	0	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0009	945	3	0	0	3	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0010	945	2	0	1	0	0	1	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0011	945	2	1	1	0	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0012	945	2	0	0	0	0	2	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0013	945	1	0	0	0	0	1	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0014	945	1	0	0	1	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0015	945	1	0	0	1	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0016	945	1	1	0	0	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0017	945	1	0	0	1	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0018	945	1	0	0	1	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/1	c0019	945	1	0	0	0	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	c0020	945	1	1	0	0	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E2_chr17_3427870_3438841	0/0	c0001	972	260	46	41	147	6	20	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	1/0	c0002	972	114	24	16	53	5	15	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	c0003	972	36	4	16	0	5	11	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/1	c0004	962	10	9	0	0	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	c0005	972	9	9	0	0	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	c0006	972	7	0	0	7	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	c0007	945	4	3	1	0	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	c0008	972	3	3	0	0	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	c0009	972	2	0	0	0	0	2	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	c0010	972	1	1	0	0	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	c0011	972	1	0	0	1	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	c0012	972	1	1	0	0	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1F1_chr16_3183204_3211556	1/1	c0001	939	150	47	22	55	8	16	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	c0002	939	130	8	29	67	4	22	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	c0003	939	13	11	2	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	c0004	939	11	10	1	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	c0005	939	7	7	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	c0006	939	4	3	1	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	c0007	939	4	4	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	c0008	939	3	0	1	0	2	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	c0009	939	2	2	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	c0010	939	1	0	1	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	c0011	939	1	0	1	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	c0012	939	1	0	0	1	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	c0013	939	1	0	0	1	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1G1_chr17_3121610_3132551	1/1	c0001	942	354	55	65	168	15	49	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0002	942	17	16	1	0	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0003	942	9	0	0	9	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0004	942	8	8	0	0	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0005	942	6	6	0	0	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0006	942	5	0	0	5	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0007	942	4	3	1	0	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0008	942	4	4	0	0	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0009	942	2	2	0	0	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0010	942	1	0	0	1	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0011	942	1	0	0	0	1	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0012	942	1	0	0	1	0	0	copy fasta	OR1G1	chr17	3121610	3132551