JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR1G1_chr17_3121610_3132551	0/0	c0013	942	1	0	0	1	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0014	942	1	1	0	0	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0015	942	1	0	1	0	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0016	942	1	1	0	0	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0017	942	1	0	0	0	0	1	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	c0018	942	1	0	0	1	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1I1_chr19_15077211_15097970	0/1	c0001	1068	175	28	45	66	8	27	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	c0002	1068	84	0	15	54	1	14	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	c0003	1068	77	2	10	55	7	3	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	c0004	1068	75	57	7	11	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	c0005	1068	15	1	0	14	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	c0006	1068	7	0	0	7	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	c0007	1068	4	4	0	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	c0008	1068	4	2	2	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	c0009	1068	3	2	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	c0010	1068	3	3	0	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	c0011	1068	3	0	0	3	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	c0012	1068	2	0	0	2	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	1/0	c0013	1068	1	0	0	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	c0014	1068	1	1	0	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	c0015	1068	1	0	0	0	0	1	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	c0016	1068	1	0	0	0	0	1	copy fasta	OR1I1	chr19	15077211	15097970
OR1J1_chr9_122471958_122482926	0/0	c0001	969	305	71	38	157	9	30	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	1/1	c0002	969	124	18	40	42	6	16	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	c0003	969	22	2	0	20	0	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	c0004	969	7	0	0	7	0	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	c0005	969	4	3	1	0	0	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	c0006	969	2	0	1	0	0	1	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	c0007	969	2	1	1	0	0	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	c0008	969	2	2	0	0	0	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	c0009	969	1	0	0	0	0	1	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	c0010	969	1	0	0	0	1	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	c0011	969	1	1	0	0	0	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	c0012	969	1	0	1	0	0	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J2_chr9_122505802_122516743	1/1	c0001	942	273	65	67	98	12	29	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	c0002	942	99	7	1	85	1	5	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	c0003	942	59	1	3	40	5	10	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	c0004	943	14	8	4	0	0	2	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	c0005	942	6	4	2	0	0	0	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	c0006	942	5	4	1	0	0	0	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	c0007	942	4	0	0	4	0	0	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	c0008	942	2	2	0	0	0	0	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	c0009	942	2	2	0	0	0	0	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	c0010	942	1	1	0	0	0	0	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	c0011	942	1	0	0	1	0	0	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	c0012	943	1	0	0	1	0	0	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	c0013	942	1	0	0	1	0	0	copy fasta	OR1J2	chr9	122505802	122516743
OR1J4_chr9_122514141_122525082	1/1	c0001	942	426	84	75	208	18	39	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	c0002	942	3	3	0	0	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	c0003	942	2	0	0	2	0	0	copy fasta	OR1J4	chr9	122514141	122525082