JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR1J4_chr9_122514141_122525082	0/0	c0004	942	2	0	2	0	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	c0005	942	1	0	0	0	0	1	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	c0006	942	1	0	0	1	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	c0007	942	1	0	1	0	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	c0008	942	1	1	0	0	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	c0009	942	1	0	0	1	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	c0010	942	1	1	0	0	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	c0011	942	1	1	0	0	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1K1_chr9_122795123_122806073	1/1	c0001	951	320	69	51	152	10	36	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0002	951	44	11	10	17	2	4	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0003	951	38	15	2	13	1	7	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0004	951	6	0	5	0	0	1	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0005	951	3	0	3	0	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0006	951	2	0	0	1	1	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0007	951	1	1	0	0	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0008	951	1	1	0	0	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0009	951	1	0	1	0	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0010	951	1	0	1	0	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0011	951	1	0	0	0	0	1	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0012	951	1	0	0	1	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0013	951	1	0	0	1	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0014	951	1	0	0	1	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0015	951	1	0	0	0	0	1	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0016	951	1	1	0	0	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	c0017	951	1	0	1	0	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1L1_chr9_122656716_122667648	1/1	c0001	933	212	22	57	86	13	32	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0002	933	142	10	20	94	4	14	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0003	933	40	15	0	24	0	1	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0004	933	22	21	1	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0005	933	7	7	0	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0006	933	6	6	0	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0007	933	6	5	1	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0008	933	5	5	0	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0009	933	5	4	1	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0010	933	1	0	0	0	1	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0011	933	1	0	1	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0012	933	1	0	0	0	0	1	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0013	933	1	0	0	1	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0014	933	1	0	1	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0015	933	1	0	0	1	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0016	933	1	0	0	1	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0017	933	1	1	0	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	c0018	933	1	0	0	1	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L3_chr9_122670130_122681104	1/1	c0001	975	306	46	69	132	13	44	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	c0002	975	42	17	1	24	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	c0003	975	14	13	1	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	c0004	975	4	0	0	3	1	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	c0005	975	3	3	0	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	c0006	975	3	3	0	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	c0007	975	2	0	0	0	2	0	copy fasta	OR1L3	chr9	122670130	122681104