JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR1L3_chr9_122670130_122681104	0/0	c0008	975	1	1	0	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	c0009	975	1	1	0	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	c0010	955	1	0	1	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	c0011	975	1	0	0	1	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	c0012	975	1	1	0	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	c0013	975	1	1	0	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L4_chr9_122718990_122729925	0/1	c0001	936	269	36	51	133	12	36	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	1/0	c0002	936	73	43	4	23	1	1	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	c0003	936	6	1	1	0	3	1	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	c0004	936	3	1	2	0	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	c0005	936	2	1	1	0	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	c0006	936	2	2	0	0	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	c0007	936	2	0	0	2	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	c0008	936	1	0	0	1	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	c0009	936	1	0	0	1	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	c0010	936	1	1	0	0	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	c0011	936	1	0	1	0	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	c0012	936	1	1	0	0	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	c0013	936	1	1	0	0	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	c0014	936	1	1	0	0	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L6_chr9_122737303_122755783	0/1	c0001	936	292	50	60	138	12	31	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	1/0	c0002	936	28	23	3	0	1	0	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	c0003	936	7	7	0	0	0	0	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	c0004	936	4	0	0	0	0	4	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	c0005	936	3	3	0	0	0	0	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	c0006	936	3	3	0	0	0	0	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	c0007	936	3	0	2	0	0	1	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	c0008	936	2	0	0	0	1	1	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	c0009	936	2	0	1	0	0	1	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	c0010	936	2	1	1	0	0	0	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	c0011	936	1	1	0	0	0	0	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	c0012	936	1	0	1	0	0	0	copy fasta	OR1L6	chr9	122737303	122755783
OR1L8_chr9_122562117_122588384	0/0	c0001	930	254	30	36	163	6	19	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	1/0	c0002	930	76	20	33	2	6	14	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/1	c0003	930	62	15	8	32	2	4	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	c0004	930	17	14	2	1	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	c0005	930	9	8	1	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	c0006	930	8	0	0	8	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	c0007	930	3	3	0	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	c0008	930	3	1	1	0	0	1	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	c0009	930	2	1	1	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	c0010	930	2	2	0	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1M1_chr19_9082061_9100669	0/1	c0001	942	309	40	43	178	11	36	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	1/0	c0002	942	96	27	35	15	5	13	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	c0003	942	10	10	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	c0004	942	4	4	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	c0005	942	4	4	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	c0006	942	4	4	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	c0007	942	2	0	0	2	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	c0008	942	2	0	0	2	0	0	copy fasta	OR1M1	chr19	9082061	9100669