JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR1M1_chr19_9082061_9100669	0/0	c0009	942	1	1	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	c0010	942	1	1	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	c0011	942	1	0	0	0	0	1	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	c0012	942	1	0	0	1	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	c0013	942	1	1	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1N1_chr9_122521358_122532293	0/0	c0001	936	162	33	21	93	5	10	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	c0002	936	98	8	1	82	1	6	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	1/1	c0003	936	84	14	24	24	7	13	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	c0004	936	76	22	21	23	3	7	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	c0005	936	14	0	8	0	2	4	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	c0006	936	6	6	0	0	0	0	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	c0007	936	3	0	3	0	0	0	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	c0008	936	3	3	0	0	0	0	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	c0009	936	2	2	0	0	0	0	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	c0010	936	1	0	0	1	0	0	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	c0011	936	1	0	0	1	0	0	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	c0012	936	1	1	0	0	0	0	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	c0013	936	1	1	0	0	0	0	copy fasta	OR1N1	chr9	122521358	122532293
OR1N2_chr9_122548112_122559214	0/0	c0001	951	183	43	30	88	7	15	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	c0002	951	82	1	2	75	1	3	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/1	c0003	951	58	14	14	22	0	7	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	1/0	c0004	951	41	10	19	0	5	6	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	c0005	951	40	13	9	8	3	7	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	c0006	951	11	5	5	0	0	1	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	c0007	951	8	6	1	1	0	0	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	c0008	951	6	2	0	3	0	1	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	c0009	951	3	3	0	0	0	0	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	c0010	951	2	1	0	1	0	0	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	c0011	951	1	0	0	1	0	0	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	c0012	951	1	0	0	1	0	0	copy fasta	OR1N2	chr9	122548112	122559214
OR1Q1_chr9_122609738_122620682	0/1	c0001	945	256	37	38	139	7	34	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	c0002	945	70	0	7	56	1	6	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	1/0	c0003	945	60	36	8	12	1	2	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	c0004	945	24	12	6	6	0	0	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	c0005	945	16	5	9	0	1	1	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	c0006	945	6	0	6	0	0	0	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	c0007	945	3	3	0	0	0	0	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	c0008	945	3	0	0	0	0	3	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	c0009	945	3	3	0	0	0	0	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	c0010	945	1	0	0	1	0	0	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	c0011	945	1	0	0	1	0	0	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	c0012	945	1	0	0	1	0	0	copy fasta	OR1Q1	chr9	122609738	122620682
OR1R1P_chr17_3380930_3391874	0/0	c0001	955	196	25	37	105	7	22	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	c0002	945	125	20	7	88	1	9	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	1/0	c0003	945	64	21	21	0	6	15	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	c0004	945	7	7	0	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	c0005	945	6	0	0	6	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	c0006	951	4	4	0	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	c0007	945	3	3	0	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	c0008	945	2	2	0	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874