JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR1R1P_chr17_3380930_3391874	0/0	c0009	945	2	1	1	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	c0010	949	1	1	0	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	c0011	949	1	1	0	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	c0012	955	1	1	0	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	c0013	955	1	0	1	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	c0014	949	1	0	1	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	c0015	945	1	0	0	1	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/1	c0016	945	1	0	0	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1S1_chr11_58207720_58221084	0/0	c0001	939	222	23	34	138	6	21	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	1/0	c0002	939	131	56	18	41	4	11	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/1	c0003	939	57	3	16	27	4	6	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	c0004	939	34	8	11	7	2	6	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	c0005	939	2	1	1	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	c0006	939	2	0	2	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	c0007	939	2	1	1	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	c0008	939	1	0	0	1	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	c0009	939	1	1	0	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	c0010	939	1	0	0	1	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	c0011	939	1	0	0	1	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	c0012	939	1	1	0	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	c0013	939	1	0	0	1	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	c0014	939	1	0	0	1	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	c0015	939	1	0	1	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	c0016	939	1	0	1	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	c0017	939	1	0	1	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S2_chr11_58198204_58209142	0/0	c0001	939	189	20	30	112	5	22	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	1/1	c0002	939	184	57	39	63	7	16	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	c0003	939	28	2	11	8	2	5	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	c0004	939	6	6	0	0	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	c0005	939	6	0	0	6	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	c0006	939	2	0	2	0	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	c0007	939	2	0	0	2	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	c0008	939	2	0	0	2	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	c0009	939	1	0	0	1	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	c0010	906	1	0	0	0	0	1	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	c0011	939	1	1	0	0	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	c0012	939	1	0	0	1	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	c0013	939	1	1	0	0	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	c0014	939	1	1	0	0	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	c0015	939	1	0	0	1	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR2A12_chr7_144081278_144103953	1/1	c0001	933	350	63	57	173	13	42	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	c0002	933	28	21	4	0	3	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	c0003	933	4	3	1	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	c0004	933	3	0	0	3	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	c0005	933	2	2	0	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	c0006	933	1	1	0	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	c0007	933	1	0	0	1	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	c0008	933	1	0	0	1	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A14_chr7_144118176_144136188	0/1	c0001	930	262	43	38	151	8	21	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	1/0	c0002	933	126	17	20	55	8	25	copy fasta	OR2A14	chr7	144118176	144136188