JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2A14_chr7_144118176_144136188	0/0	c0003	933	24	22	2	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	c0004	933	5	5	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	c0005	930	4	3	1	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	c0006	930	1	0	1	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	c0007	933	1	1	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	c0008	933	1	1	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	c0009	933	1	1	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	c0010	930	1	1	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A1_chr7_144307419_144327737	0/0	c0001	933	35	3	7	21	2	2	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	c0002	933	22	0	6	13	0	3	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	c0003	933	20	5	3	9	0	3	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	1/0	c0004	933	12	0	4	2	1	4	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	c0005	933	11	3	5	2	1	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	c0006	933	4	3	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	c0007	933	2	1	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	c0008	933	2	2	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	c0009	933	2	1	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	c0010	933	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	c0011	933	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	c0012	933	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	c0013	933	1	1	0	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	c0014	933	1	0	1	0	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	c0015	933	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A1_chr7_144307419_144327737	0/0	c0016	933	1	0	0	1	0	0	copy fasta	OR2A1	chr7	144307419	144327737
OR2A25_chr7_144064811_144080870	1/0	c0001	933	140	10	24	78	8	19	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	c0002	933	85	2	21	54	0	8	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/1	c0003	933	81	9	7	55	3	6	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	c0004	933	78	44	18	2	5	9	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	c0005	933	17	16	1	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	c0006	933	5	5	0	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	c0007	933	5	5	0	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	c0008	933	2	2	0	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	c0009	933	1	1	0	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	c0010	933	1	0	0	1	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	c0011	933	1	0	0	1	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	c0012	933	1	0	0	1	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A25_chr7_144064811_144080870	0/0	c0013	933	1	0	1	0	0	0	copy fasta	OR2A25	chr7	144064811	144080870
OR2A2_chr7_144104583_144115539	0/1	c0001	957	237	35	42	135	5	19	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	1/0	c0002	957	118	20	19	51	5	22	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	c0003	957	31	23	5	0	3	0	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	c0004	957	10	9	1	0	0	0	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	c0005	957	3	3	0	0	0	0	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	c0006	957	3	0	1	0	1	1	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	c0007	957	2	2	0	0	0	0	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	c0008	957	1	1	0	0	0	0	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	c0009	957	1	0	0	1	0	0	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	c0010	957	1	0	0	1	0	0	copy fasta	OR2A2	chr7	144104583	144115539
OR2A2_chr7_144104583_144115539	0/0	c0011	957	1	1	0	0	0	0	copy fasta	OR2A2	chr7	144104583	144115539
OR2A42_chr7_144223244_144244605	0/0	c0001	933	40	4	6	23	2	5	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0002	933	30	2	5	21	0	2	copy fasta	OR2A42	chr7	144223244	144244605