JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2A42_chr7_144223244_144244605	1/0	c0003	933	28	6	8	6	3	4	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0004	933	28	4	5	14	0	5	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/1	c0005	933	14	4	4	3	0	2	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0006	933	6	5	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0007	929	3	3	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0008	933	2	0	0	0	0	2	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0009	933	2	2	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0010	933	1	0	0	0	1	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0011	933	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0012	933	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0013	929	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0014	933	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0015	933	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0016	933	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0017	933	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	c0018	933	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A4_chr6_131694644_131706401	0/1	c0001	933	231	50	49	95	11	25	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0002	933	83	7	8	60	1	7	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0003	933	23	17	2	0	2	2	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0004	933	8	5	2	0	0	1	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0005	933	8	7	1	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0006	933	7	0	0	7	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0007	933	5	5	0	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0008	933	3	0	0	3	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0009	933	2	2	0	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0010	933	2	2	0	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0011	933	1	0	0	1	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0012	933	1	1	0	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0013	933	1	0	0	1	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0014	933	1	1	0	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0015	933	1	0	0	0	0	1	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0016	933	1	1	0	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	c0017	933	1	0	0	1	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A5_chr7_144043948_144063845	0/1	c0001	936	195	27	26	124	3	14	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	1/0	c0002	936	126	8	24	68	8	17	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	c0003	936	74	40	18	2	5	9	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	c0004	934	7	6	1	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	c0005	936	5	4	1	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	c0006	936	5	5	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	c0007	936	5	5	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	c0008	936	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	c0009	936	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	c0010	936	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A7_chr7_144252663_144269792	0/0	c0001	933	112	32	13	49	6	12	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	c0002	933	42	2	8	29	2	1	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	c0003	918	19	4	0	14	0	1	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	c0004	933	6	6	0	0	0	0	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	c0005	933	2	0	2	0	0	0	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	c0006	933	1	0	1	0	0	0	copy fasta	OR2A7	chr7	144252663	144269792
OR2AE1_chr7_99871062_99882033	1/1	c0001	972	181	9	45	99	9	17	copy fasta	OR2AE1	chr7	99871062	99882033