JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2AE1_chr7_99871062_99882033	0/0	c0002	972	127	20	20	64	5	18	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	c0003	972	46	38	4	0	2	2	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	c0004	972	21	20	1	0	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	c0005	972	4	4	0	0	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	c0006	972	3	3	0	0	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	c0007	972	1	0	1	0	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	c0008	972	1	0	1	0	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	c0009	972	1	0	1	0	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	c0010	972	1	0	0	0	0	1	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	c0011	972	1	0	1	0	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AE1_chr7_99871062_99882033	0/0	c0012	972	1	0	0	1	0	0	copy fasta	OR2AE1	chr7	99871062	99882033
OR2AG1_chr11_6778020_6796558	1/1	c0001	951	318	72	64	140	8	32	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0002	951	98	3	17	59	6	13	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0003	951	25	0	0	22	0	3	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0004	951	8	7	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0005	951	3	3	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0006	951	3	1	1	0	0	1	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0007	951	2	2	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0008	951	2	1	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0009	951	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0010	951	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0011	951	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0012	951	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0013	951	1	0	0	0	0	1	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0014	951	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0015	951	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0016	951	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	c0017	951	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG2_chr11_6760626_6776976	0/0	c0001	951	169	25	30	98	7	9	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0002	951	81	9	15	42	6	9	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0003	951	64	32	7	15	1	9	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	1/1	c0004	951	48	7	11	24	0	4	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0005	951	41	1	10	19	1	10	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0006	951	32	10	2	18	0	2	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0007	951	6	6	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0008	951	5	0	0	5	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0009	951	5	0	0	5	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0010	951	4	0	0	4	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0011	951	3	3	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0012	951	2	0	2	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0013	951	1	0	0	0	1	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0014	951	1	0	0	0	0	1	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0015	951	1	0	1	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0016	951	1	0	0	0	0	1	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0017	951	1	1	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	c0018	951	1	0	0	0	0	1	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AJ1_chr1_247919889_247940339	1/1	c0001	987	392	73	69	186	14	48	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	c0002	987	17	15	2	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	c0003	987	6	4	2	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	c0004	987	5	0	0	5	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339