JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2AJ1_chr1_247919889_247940339	0/0	c0005	987	4	0	2	0	2	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	c0006	987	4	3	1	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	c0007	987	1	1	0	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	c0008	987	1	1	0	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	c0009	987	1	0	0	1	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	c0010	987	1	1	0	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AK2_chr1_247960233_247971386	0/0	c0001	963	169	9	47	78	14	21	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/1	c0002	963	156	22	23	89	3	18	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	1/0	c0003	963	60	50	8	1	0	0	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	c0004	963	14	0	1	13	0	0	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	c0005	963	13	0	0	11	1	1	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	c0006	963	7	6	1	0	0	0	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	c0007	963	5	5	0	0	0	0	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	c0008	963	3	2	1	0	0	0	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	c0009	963	2	2	0	0	0	0	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	c0010	963	1	0	1	0	0	0	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	c0011	963	1	0	0	0	0	1	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AK2_chr1_247960233_247971386	0/0	c0012	963	1	0	0	0	0	1	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AP1_chr12_55567468_55580612	1/0	c0001	930	416	66	68	224	17	40	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/1	c0002	930	24	2	10	5	1	5	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	c0003	930	14	14	0	0	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	c0004	930	9	8	1	0	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	c0005	930	5	5	0	0	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	c0006	930	2	0	0	2	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	c0007	930	2	2	0	0	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	c0008	930	1	0	0	0	0	1	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	c0009	930	1	1	0	0	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	c0010	932	1	0	0	1	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	c0011	930	1	0	0	1	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	c0012	930	1	0	0	1	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	c0013	930	1	0	1	0	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AT4_chr11_75076753_75101876	1/1	c0001	963	362	57	55	194	16	38	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	c0002	963	19	19	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	c0003	963	17	17	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	c0004	963	8	1	4	3	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	c0005	963	2	2	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	c0006	963	2	0	0	2	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	c0007	963	1	1	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	c0008	963	1	1	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	c0009	963	1	0	1	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	c0010	963	1	0	0	0	0	1	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	c0011	963	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	c0012	963	1	0	0	0	0	1	copy fasta	OR2AT4	chr11	75076753	75101876
OR2B11_chr1_247444182_247463104	0/1	c0001	954	122	8	13	78	8	14	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0002	953	109	27	26	42	3	11	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0003	953	45	0	9	35	0	1	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0004	954	45	17	6	18	3	1	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0005	954	22	2	14	1	2	3	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0006	953	15	0	7	1	0	7	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0007	953	14	0	0	14	0	0	copy fasta	OR2B11	chr1	247444182	247463104