Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCC3_chr17_50629881_50697253	0/0	c0015	4584	1	0	0	0	1	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0016	4584	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0017	4584	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0018	4584	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0019	4584	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0020	4584	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0021	4584	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0022	4584	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0023	4584	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0024	4584	1	0	0	0	0	1	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0025	4570	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0026	4584	1	0	0	0	1	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0027	4584	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0028	4584	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0029	4584	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0030	4584	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0031	4584	1	0	0	0	0	1	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0032	4584	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0033	4584	1	0	1	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0034	4584	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0035	4584	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0036	4584	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0037	4584	1	0	1	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0038	4584	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0039	4584	1	0	0	0	0	1	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0040	4584	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0041	4584	1	1	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0042	4584	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0043	4584	1	0	0	0	0	1	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0044	4584	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0045	4584	1	0	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC4_chr13_95014835_95306451	0/1	c0001	3978	37	5	10	11	4	6	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0002	3978	23	3	6	11	2	1	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0003	3978	23	6	4	9	0	4	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0004	3978	16	6	1	6	0	3	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0005	3978	14	3	1	8	0	2	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0006	3978	9	0	0	8	0	1	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	1/0	c0007	3978	8	1	0	6	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0008	3978	7	0	0	7	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0009	3978	6	5	1	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0010	3978	6	1	4	0	1	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0011	3978	4	0	0	4	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0012	3978	4	4	0	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0013	3978	4	4	0	0	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0014	3978	4	0	2	2	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0015	3978	4	2	1	0	0	1	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0016	3978	3	0	0	3	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0017	3978	3	1	0	1	1	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0018	3978	3	0	0	3	0	0	copy fasta	ABCC4	chr13	95014835	95306451
ABCC4_chr13_95014835_95306451	0/0	c0019	3978	3	0	0	3	0	0	copy fasta	ABCC4	chr13	95014835	95306451