JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARFGAP3_chr22_42791502_42862273	0/0	c0008	1551	5	5	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0009	1551	5	4	1	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0010	1551	3	1	1	0	1	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0011	1551	2	0	0	2	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0012	1551	2	0	0	0	2	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0013	1551	2	2	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0014	1551	1	1	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0015	1551	1	0	0	0	0	1	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0016	1551	1	1	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0017	1551	1	0	1	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGAP3_chr22_42791502_42862273	0/0	c0018	1551	1	1	0	0	0	0	copy fasta	ARFGAP3	chr22	42791502	42862273
ARFGEF1_chr8_67192658_67348781	1/1	c0001	5550	183	56	42	59	2	22	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	c0002	5550	5	5	0	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	c0003	5550	5	5	0	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	c0004	5550	5	0	0	5	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	c0005	5550	2	0	0	2	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	c0006	5550	1	1	0	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	c0007	5550	1	0	1	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	c0008	5550	1	0	0	1	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	c0009	5550	1	0	0	1	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	c0010	5550	1	0	0	1	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	c0011	5550	1	0	1	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	c0012	5550	1	0	0	1	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF1_chr8_67192658_67348781	0/0	c0013	5550	1	1	0	0	0	0	copy fasta	ARFGEF1	chr8	67192658	67348781
ARFGEF2_chr20_48916711_49041693	0/1	c0001	5358	128	46	19	49	3	10	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	1/0	c0002	5358	126	28	24	52	5	16	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	c0003	5358	76	4	16	44	0	12	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	c0004	5358	6	0	1	5	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	c0005	5358	3	3	0	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	c0006	5358	2	0	2	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	c0007	5358	2	0	2	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	c0008	5358	1	0	0	1	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	c0009	5358	1	0	0	0	0	1	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	c0010	5358	1	0	0	1	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	c0011	5358	1	0	1	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	c0012	5358	1	0	0	1	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	c0013	5358	1	0	0	0	0	1	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	c0014	5358	1	0	1	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	c0015	5358	1	0	0	1	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF2_chr20_48916711_49041693	0/0	c0016	5358	1	1	0	0	0	0	copy fasta	ARFGEF2	chr20	48916711	49041693
ARFGEF3_chr6_138156939_138349663	1/0	c0001	6534	56	11	12	18	3	11	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0002	6534	26	6	2	16	0	2	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0003	6534	17	5	0	11	1	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0004	6534	16	1	6	7	0	2	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0005	6534	9	5	1	2	0	1	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0006	6534	7	7	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0007	6534	7	2	1	1	0	3	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0008	6534	5	5	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0009	6534	4	4	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663
ARFGEF3_chr6_138156939_138349663	0/0	c0010	6534	3	3	0	0	0	0	copy fasta	ARFGEF3	chr6	138156939	138349663