JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2B11_chr1_247444182_247463104	0/0	c0008	954	14	1	3	7	0	3	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0009	954	14	13	1	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0010	954	12	0	0	8	2	2	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0011	953	10	1	4	2	0	3	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0012	953	10	4	0	5	0	1	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0013	953	5	0	0	5	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	1/0	c0014	954	4	2	1	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0015	953	3	0	0	2	0	1	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0016	954	3	3	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0017	954	3	3	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0018	953	2	0	0	2	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0019	953	2	1	1	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0020	953	2	0	0	2	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0021	954	2	2	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0022	954	2	2	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0023	954	2	2	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0024	953	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0025	953	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0026	953	1	0	0	1	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0027	954	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0028	954	1	0	0	0	0	1	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0029	954	1	0	0	1	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0030	954	1	0	0	1	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0031	954	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0032	954	1	0	1	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0033	954	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0034	954	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0035	954	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0036	954	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0037	954	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0038	954	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	c0039	954	1	0	0	1	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B2_chr6_27906185_27917396	1/1	c0001	1074	328	68	58	150	13	37	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	c0002	1074	25	1	11	9	0	4	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	c0003	1074	11	10	1	0	0	0	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	c0004	1074	11	7	2	0	0	2	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	c0005	1074	9	2	6	0	1	0	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	c0006	1074	5	0	0	5	0	0	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	c0007	1074	3	3	0	0	0	0	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	c0008	1074	2	0	0	2	0	0	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	c0009	1074	1	0	0	0	0	1	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	c0010	1074	1	1	0	0	0	0	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	c0011	1074	1	1	0	0	0	0	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	c0012	1074	1	1	0	0	0	0	copy fasta	OR2B2	chr6	27906185	27917396
OR2B3_chr6_29081208_29092313	0/1	c0001	942	407	96	72	184	14	40	copy fasta	OR2B3	chr6	29081208	29092313
OR2B3_chr6_29081208_29092313	0/0	c0002	942	1	0	1	0	0	0	copy fasta	OR2B3	chr6	29081208	29092313
OR2B3_chr6_29081208_29092313	0/0	c0003	942	1	0	1	0	0	0	copy fasta	OR2B3	chr6	29081208	29092313
OR2B6_chr6_27952241_27963182	1/0	c0001	942	338	71	54	172	9	31	copy fasta	OR2B6	chr6	27952241	27963182
OR2B6_chr6_27952241_27963182	0/0	c0002	942	34	1	11	17	0	5	copy fasta	OR2B6	chr6	27952241	27963182
OR2B6_chr6_27952241_27963182	0/1	c0003	942	25	12	4	4	3	1	copy fasta	OR2B6	chr6	27952241	27963182