JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2B6_chr6_27952241_27963182	0/0	c0004	942	6	0	3	1	0	2	copy fasta	OR2B6	chr6	27952241	27963182
OR2B6_chr6_27952241_27963182	0/0	c0005	942	4	4	0	0	0	0	copy fasta	OR2B6	chr6	27952241	27963182
OR2B6_chr6_27952241_27963182	0/0	c0006	942	4	4	0	0	0	0	copy fasta	OR2B6	chr6	27952241	27963182
OR2B6_chr6_27952241_27963182	0/0	c0007	942	2	2	0	0	0	0	copy fasta	OR2B6	chr6	27952241	27963182
OR2B6_chr6_27952241_27963182	0/0	c0008	942	2	0	0	0	0	2	copy fasta	OR2B6	chr6	27952241	27963182
OR2B6_chr6_27952241_27963182	0/0	c0009	942	2	0	0	0	0	2	copy fasta	OR2B6	chr6	27952241	27963182
OR2B6_chr6_27952241_27963182	0/0	c0010	942	1	0	0	0	0	1	copy fasta	OR2B6	chr6	27952241	27963182
OR2C1_chr16_3350889_3362306	0/1	c0001	939	211	28	34	119	7	22	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0002	939	96	27	20	36	6	7	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0003	939	49	24	10	10	1	4	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0004	939	29	0	11	18	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0005	938	15	0	1	10	0	4	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0006	939	15	12	1	1	0	1	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0007	939	3	0	0	0	0	3	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0008	939	2	2	0	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0009	939	2	2	0	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0010	939	2	2	0	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0011	939	1	0	1	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0012	939	1	1	0	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	1/0	c0013	939	1	0	0	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0014	939	1	0	0	0	0	1	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0015	939	1	0	1	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0016	939	1	0	0	0	0	1	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0017	939	1	0	0	0	0	1	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	c0018	939	1	0	1	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C3_chr1_247519677_247541440	0/1	c0001	963	325	65	59	162	13	25	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	c0002	963	74	12	12	36	1	13	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	c0003	963	26	0	4	19	0	3	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	c0004	963	17	4	2	0	4	7	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	c0005	963	7	7	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	c0006	963	6	6	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	c0007	963	2	2	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	1/0	c0008	963	1	0	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	c0009	963	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	c0010	963	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2D2_chr11_6886574_6897500	0/0	c0001	927	168	29	22	90	4	23	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	c0002	927	146	3	24	100	7	12	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/1	c0003	927	69	2	27	28	5	6	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	c0004	927	41	11	4	21	1	4	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	1/0	c0005	927	21	16	4	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	c0006	925	14	13	1	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	c0007	927	4	4	0	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	c0008	927	4	4	0	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	c0009	927	3	3	0	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	c0010	927	3	3	0	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	c0011	927	3	0	0	3	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	c0012	927	2	2	0	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	c0013	927	1	0	0	0	0	1	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	c0014	927	1	0	0	0	1	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D2_chr11_6886574_6897500	0/0	c0015	927	1	1	0	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500