JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR2D2_chr11_6886574_6897500	0/0	c0016	925	1	1	0	0	0	0	copy fasta	OR2D2	chr11	6886574	6897500
OR2D3_chr11_6916002_6926994	0/0	c0001	993	205	48	22	107	7	21	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	c0002	993	106	7	18	70	5	6	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	c0003	993	86	3	20	46	2	15	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/1	c0004	993	23	10	8	1	3	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	c0005	992	14	7	6	0	0	1	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	c0006	993	14	14	0	0	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	c0007	993	4	1	1	0	0	2	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	1/0	c0008	993	3	2	0	0	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	c0009	993	3	2	1	0	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	c0010	993	1	0	0	1	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	c0011	993	1	0	0	1	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	c0012	993	1	0	0	0	1	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	c0013	992	1	1	0	0	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	c0014	993	1	0	0	1	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	c0015	993	1	0	0	1	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	c0016	993	1	0	0	0	0	1	copy fasta	OR2D3	chr11	6916002	6926994
OR2D3_chr11_6916002_6926994	0/0	c0017	993	1	1	0	0	0	0	copy fasta	OR2D3	chr11	6916002	6926994
OR2F1_chr7_143949844_143969360	1/1	c0001	954	185	23	35	85	8	32	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	c0002	954	103	16	10	70	1	6	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	c0003	954	67	10	15	38	0	4	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	c0004	954	29	25	3	0	1	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	c0005	954	12	12	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	c0006	954	2	0	0	2	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	c0007	954	2	1	1	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	c0008	954	1	0	0	1	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	c0009	954	1	1	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F2_chr7_143930233_143941186	1/1	c0001	954	183	25	33	90	10	23	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	c0002	954	144	29	19	91	0	5	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	c0003	954	24	21	2	0	1	0	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	c0004	954	15	10	4	0	1	0	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	c0005	954	12	2	2	7	0	1	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	c0006	954	4	4	0	0	0	0	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	c0007	954	3	0	0	3	0	0	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	c0008	954	2	0	0	2	0	0	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	c0009	954	1	0	0	0	0	1	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	c0010	954	1	1	0	0	0	0	copy fasta	OR2F2	chr7	143930233	143941186
OR2F2_chr7_143930233_143941186	0/0	c0011	954	1	0	0	1	0	0	copy fasta	OR2F2	chr7	143930233	143941186
OR2G2_chr1_247583360_247594313	0/0	c0001	954	118	2	12	93	5	6	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/1	c0002	954	107	15	16	52	5	18	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	1/0	c0003	954	87	36	7	37	0	6	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0004	954	45	0	9	32	0	4	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0005	954	21	1	7	1	3	9	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0006	954	19	15	4	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0007	954	13	0	12	0	0	1	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0008	954	9	8	1	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0009	954	8	0	3	3	0	2	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0010	954	5	0	0	3	1	1	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0011	954	5	5	0	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313
OR2G2_chr1_247583360_247594313	0/0	c0012	954	5	4	1	0	0	0	copy fasta	OR2G2	chr1	247583360	247594313